View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_low_7 (Length: 455)
Name: NF11653_low_7
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 40290246 - 40290689
Alignment:
| Q |
18 |
ataagtggtatgatctcttcgtaatggtaagcagtttagacatgggtcgtactatctcatccttacggcagacagtttctacatgaattgtaatatctct |
117 |
Q |
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| T |
40290246 |
ataagtggtatgatctcttcgtaatggtaaacagtttagacatgggtcgtactatcttatccttacggcagacagtttctacatgaattgtaatatctct |
40290345 |
T |
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| Q |
118 |
ttgttgcatcaaacgaaacacctatagaaattctatattcgctttccacatgagatgcattatctcttcgttgcagtgtaagatgtttgttcatagaata |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40290346 |
ttgttgcatcaaacaaaacacctatagaaattctatattcgctttccgcataagatacattatctcttcgttgcagtgtaagatgtttgttcatagaata |
40290445 |
T |
|
| Q |
218 |
cattttcttctcaacttttcataattccgatcaatgtcgtgagaatttgatctcgtgcaacactttctcaaaataatcatacaatccacatcattgtaga |
317 |
Q |
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| T |
40290446 |
cattttcttctcaacttttcataattccgatcaatgtcgtgtgaatttgatctcgtgcaacactttctcaaaataatcatacaatccacatcattgtaga |
40290545 |
T |
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| Q |
318 |
aagattatacaacaaaattattattggttgtagtcataattaaaactattctctctatatattattttctattgttgataccg-------------ttag |
404 |
Q |
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| T |
40290546 |
aagattatacaacaaaattattattgattgtagtcataattaaaactattctctctatatattattttctattgttgataccgtttccttagcatcttat |
40290645 |
T |
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| Q |
405 |
ttttctttattttgagatattctctcttgtatctatatttgctt |
448 |
Q |
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| T |
40290646 |
ttttctttattttgagatattctctcttgtatctatatttgctt |
40290689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 385
Target Start/End: Original strand, 40283034 - 40283190
Alignment:
| Q |
223 |
tcttctcaacttttcataattccgatcaatgtcgtgagaatttgatctcgtgcaacactttctcaaaataatcatacaatccacatcattgtagaaagat |
322 |
Q |
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|||| ||||||||||||||||| ||||||||| |||||||||| |||| ||||||| || |||||| |||||||||||||||||||| ||| ||| || |
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| T |
40283034 |
tcttatcaacttttcataattctaatcaatgtcatgagaatttgttctcatgcaacagttgctcaaa-taatcatacaatccacatcactgttaaaaaat |
40283132 |
T |
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| Q |
323 |
tatacaacaaaattattattggttgtagtcataattaaaactattctctctatatattatttt |
385 |
Q |
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||||||| ||||||||| | | |||||||||||||||||||||||||| ||||||||| |
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| T |
40283133 |
tatacaa-----ttattattgatcattgtcataattaaaactattctctctatttattatttt |
40283190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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