View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_high_12 (Length: 444)
Name: NF11654_high_12
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 99 - 436
Target Start/End: Original strand, 971954 - 972290
Alignment:
| Q |
99 |
tcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatcatacgctaattagtataaagtcctgtcaaatattttacaacattcagcg |
198 |
Q |
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| T |
971954 |
tcttgcatgactttatctgaagcctccagctcaaacagtttctcctcaatgatacgctaattagtataaagtcctgtcaaatattttataacattcagca |
972053 |
T |
|
| Q |
199 |
tagagtttatatatcattgcaacagatgattatatatcatatcagtgacctggcctggctgctagtgcatagaaagttagtattgtgaaagtgaaagaga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
972054 |
tagagtttatatatcattgcaacagatgattatatatcatatcagtgacctggcctggctgctagtgcatagaaagttagtattgtgaaagtgaaagaga |
972153 |
T |
|
| Q |
299 |
cgtgtatgagaaaccgaggcggagagaatgtgtaaaataatattacaaaaaacattttgaccacaaataaaattgggacggggcgggtaacccgagggtt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
972154 |
tgtgtatgagaaaccgaggcggagagaatgtgtaaaataatatta-aaaaaccattttgtccacaaataaaattgggacgggacgggtaacccgagggtt |
972252 |
T |
|
| Q |
399 |
aatccgaacccgatcactgtttcagttatgttcatctc |
436 |
Q |
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| T |
972253 |
aatccgaacccgatcactgtttcagttatgttcatctc |
972290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 971718 - 971851
Alignment:
| Q |
6 |
attttagtggttggatggtggcacttaaagtcctactaagccatatttcttttgccattggatgcatatctaacaaaccttaaaccaaatccttcttgta |
105 |
Q |
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| T |
971718 |
attttagtggttggatggtggcacttaaagccctactaagccatatttcttttgccattggatgcatatctaacaaaccttaaaccaaatccttcttgta |
971817 |
T |
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| Q |
106 |
tgactttctctgaagcctccagctcaaacagttt |
139 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
971818 |
tgactttctctgaagcctccagctcaaacagttt |
971851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 1028787 - 1028889
Alignment:
| Q |
72 |
tatctaacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatcatacgctaattagtataaagtc |
171 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
1028787 |
tatctaacaaaccttaaacaaatgccttcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatgatacactaattagtataaagtc |
1028886 |
T |
|
| Q |
172 |
ctg |
174 |
Q |
| |
|
||| |
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|
| T |
1028887 |
ctg |
1028889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 1011482 - 1011591
Alignment:
| Q |
72 |
tatctaacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatcatacgctaattagtataaagtc |
171 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
1011482 |
tatctaacaaaccttaaacaagtgccttcttgtatgactttctctgaagtctccagctcaaacagtttctcctctatgatacactaattagtataaagtc |
1011581 |
T |
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| Q |
172 |
ctgtcaaata |
181 |
Q |
| |
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|||| ||||| |
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| T |
1011582 |
ctgtgaaata |
1011591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 1008971 - 1009102
Alignment:
| Q |
49 |
tatttcttttgccattggatgcatatctaacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagctcaaacagtttctcctctat |
148 |
Q |
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||||||||| ||||||||||||||||| | ||||||||||| | |||||||||||||||||| ||||| |||||||||||||| |||||||||| | |
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| T |
1008971 |
tatttctttaaccattggatgcatatctgaaaaaccttaaacgca-tccttcttgtatgactttatctgacgcctccagctcaaatagtttctccttgtt |
1009069 |
T |
|
| Q |
149 |
catacgctaattagtataaagtcctgtcaaata |
181 |
Q |
| |
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||||| || ||||||||||||||||||||||| |
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| T |
1009070 |
gatacgttatttagtataaagtcctgtcaaata |
1009102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 991220 - 991304
Alignment:
| Q |
96 |
ccttcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatcatacgctaattagtataaagtcctgtcaaata |
181 |
Q |
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| T |
991220 |
ccttcttgtatgactttatctgaagcctt-agcttaaacagtttctcctatatgatacgctatttagtataaagtgctgccaaata |
991304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 1024613 - 1024680
Alignment:
| Q |
60 |
ccattggatgcatatctaacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagct |
129 |
Q |
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| T |
1024613 |
ccattggatgcatatctgacaaactttaa--cacatccttcttgtatgactttatctgacgtctccagct |
1024680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 22670527 - 22670445
Alignment:
| Q |
72 |
tatctaacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatcatacg |
154 |
Q |
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||||||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||| | |||||||||| ||||| |
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| T |
22670527 |
tatctaacaaaccttaaacacatgccttcttgaatgactttctctgaagcctccaactcaaacaatctctcctctattatacg |
22670445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 376
Target Start/End: Original strand, 5587086 - 5587196
Alignment:
| Q |
267 |
atagaaagttagtattgtgaaagtgaaagagacgtgtatgagaaaccgaggcggagagaatgtgtaaaataatatt-acaaaaaacattttgaccacaaa |
365 |
Q |
| |
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||||||||||||||||||||||| |||| || | ||||| ||| ||||| | ||| || | |||||||||||||| | |||||| |||||| || |||| |
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| T |
5587086 |
atagaaagttagtattgtgaaagagaaaaagtcatgtataagagaccgaaactgagtgagtatgtaaaataatattaaaaaaaaatattttgtcctcaaa |
5587185 |
T |
|
| Q |
366 |
taaaattggga |
376 |
Q |
| |
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| ||||||||| |
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|
| T |
5587186 |
ttaaattggga |
5587196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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