View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_high_27 (Length: 292)
Name: NF11654_high_27
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_high_27 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 35509035 - 35509309
Alignment:
| Q |
18 |
caattagtttcatcatgaattgcaccatagattaattcattatttcatgaaataacattgccccataatttctgtttgtttcagaatcacaaacttattg |
117 |
Q |
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| T |
35509035 |
caattagtttcatcatgaattgcaccatagattaattcattatttcatgaaataacattgccccataatttctgtttgtttcagaatcacaaacttattg |
35509134 |
T |
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| Q |
118 |
tagtggaagcagatggaaactatgtgcacccattcgcagtcgatgacatcgacatctactcaggtgaaacctactcagtcctccttacaacagaccaaga |
217 |
Q |
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| T |
35509135 |
tagtggaagcagatggaaactatgtgcacccattcgcagtcgatgacatcgacatctactcaggtgaaacctactcagtcctccttacaacagaccaaga |
35509234 |
T |
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| Q |
218 |
ccctnnnnnnnnctactggctttcaatcggagttagaggtagaaaaccaagcacaccacaagccctaacaatcct |
292 |
Q |
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| T |
35509235 |
ccctaaaaaaaactactggctttcaatcggagttagaggtagaaaaccaagcacaccacaagccctaacaatcct |
35509309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 22 - 292
Target Start/End: Original strand, 35541664 - 35541935
Alignment:
| Q |
22 |
tagtttcatcatgaattgcaccatagattaattcattatttcatgaaataacattgcccc-ataatttctgtttgtttcagaatcacaaacttattgtag |
120 |
Q |
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| T |
35541664 |
tagtttcatcatgaatttcaccatagatcagatcattctttcatcaactaacattgcccccatattttgtctatgtcgtagaatcacaaactacttgtag |
35541763 |
T |
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| Q |
121 |
tggaagcagatggaaactatgtgcacccattcgcagtcgatgacatcgacatctactcaggtgaaacctactcagtcctccttacaacagaccaagaccc |
220 |
Q |
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| T |
35541764 |
tagaagctgatggaaactacgtgcacccatttgcagttgatgacatagacatatactcaggtgaaacctactcagtactcattaaaacaaaccaaaaccc |
35541863 |
T |
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| Q |
221 |
tnnnnnnnnctactggctttcaatcggagttagaggtagaaaaccaagcacaccacaagccctaacaatcct |
292 |
Q |
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| T |
35541864 |
cacaaaaaactactggattgcaatcggtgttagaggtagaaaacctaacacaccacaagccctaacaatcct |
35541935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 292
Target Start/End: Original strand, 35527314 - 35527506
Alignment:
| Q |
100 |
agaatcacaaacttattgtagtggaagcagatggaaactatgtgcacccattcgcagtcgatgacatcgacatctactcaggtgaaacctactcagtcct |
199 |
Q |
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| T |
35527314 |
agaatcacacacttgttgtggtggaagcagatggaaactacgtgcacccattcacggttgatagcatagacatctactcaggtgaaacctactcagtact |
35527413 |
T |
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| Q |
200 |
ccttaca-acagaccaagaccctnnnnnnnnctactggctttcaatcggagttagaggtagaaaaccaagcacaccacaagccctaacaatcct |
292 |
Q |
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| T |
35527414 |
-cttacatacagaccaagacccaagccaaaactactggctctcagtcggcattataagcagaaaatcagacacaccacaagccctaacaatcct |
35527506 |
T |
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