View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_high_4 (Length: 542)
Name: NF11654_high_4
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 22 - 537
Target Start/End: Original strand, 22448983 - 22449494
Alignment:
| Q |
22 |
tgctgttctttagtaaatatttataatgtttataactgtctataattcccttaaagcacataaatctctcaacatttcatgtctgcatgtcatacttatg |
121 |
Q |
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| T |
22448983 |
tgctgttctttagtaaatatttataatgtttataactgtctataattcccttaaagcacataaatctctcaacatttcatgtctgcatgtcatacttatg |
22449082 |
T |
|
| Q |
122 |
agtagagagagaacaacatctatggtattttatgtaagttttctcttgtgtatacttgcgcatactttatattacatggagagtaatatccgcacaccta |
221 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22449083 |
agtagag----aacaacatctatggtattttatgtaagttttctcttgtgtatacttgcgcatactttatattacatggagagtaatatccgcacaccta |
22449178 |
T |
|
| Q |
222 |
taagttacagatagatcataatggcaggacagctacccgaaggaaatcctagtacactccatttgtattagagatcctcaacatttatcaatattttgta |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22449179 |
taagttacagatagatcataatggcaggacagctacccgaaggaaatgctagtacactccattggtattagagatcctcaacatttatcaatattttgta |
22449278 |
T |
|
| Q |
322 |
tcccttttcttcgaaatacgtttctgttttggcaaaaaatgatcattgtggctttctgcttttatagaactcaaaaatcccattttttatgaaccgcaac |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22449279 |
tcccttttcttcgaaatacgtttctgttttggcaaaaaatgatcatcgtggctttctgcttttatagaactcaaaaatcccattttttatgaaccgcaac |
22449378 |
T |
|
| Q |
422 |
tgcgcatcgcacatacctttgcacatcgcgtattaggcagtagccgaaacattccgggtcttcaatcttgtgcgttgtgcagctttcatgcacattgtgc |
521 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22449379 |
tgcgcatcgcacatatctttgcacatcgcgtattaggcagtagccgaaacattccgggtcttcaatcttgtgcgttgtgcagctttcatgcacattgtgc |
22449478 |
T |
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| Q |
522 |
agcttttctctgcttc |
537 |
Q |
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|||||||||||||||| |
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| T |
22449479 |
agcttttctctgcttc |
22449494 |
T |
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