View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_high_41 (Length: 238)
Name: NF11654_high_41
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 11901251 - 11901333
Alignment:
| Q |
16 |
atttcaccattaaataaaaggggnnnnnnntctccatacacagcttgcaatagctaccatcatggcctaaagcaaatatcata |
98 |
Q |
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| T |
11901251 |
atttcaccattaaataaaaggggaaaaaaatctccatacacagcttgcaatagctaccatcatggcctaaagcaaatatcata |
11901333 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 11901413 - 11901475
Alignment:
| Q |
176 |
tagttagttttttctcaagatgggcaactcagcagggctgctacgaggaaattataaaagaac |
238 |
Q |
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| T |
11901413 |
tagttagttttttctcaagatgggcaactcagcagggctgctaggaggaaattacaaaagaac |
11901475 |
T |
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