View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_high_44 (Length: 216)
Name: NF11654_high_44
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 46749543 - 46749348
Alignment:
| Q |
1 |
tatttaatggtaaatgttttgaactggacagaggcccgattctcggatgtgaaagtccaataatgaaactaaggttcaacgaaggcgcccaaaagtatct |
100 |
Q |
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| T |
46749543 |
tatttaatggtaaatgttttgaactggactgagacccgattctcggatgtaaaagtccaaaaatgaaactaaggttcaacgaagacgcccaaaagtatct |
46749444 |
T |
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| Q |
101 |
acggatgtaacaacaaaagtcgcaaggcaccaaataaggtgctaaagtaaatcttagccctccaaacaatcaagcggtcacccgacctttgtgcca |
196 |
Q |
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| T |
46749443 |
atagatataacaacaaaagtcgcaaggcaccaaataaggtgctaaagtaaatcttagccctccaaacaatcaagcggtcacccgacctttgtgcca |
46749348 |
T |
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