View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_high_5 (Length: 524)
Name: NF11654_high_5
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 78 - 509
Target Start/End: Original strand, 30357491 - 30357922
Alignment:
| Q |
78 |
gtatatgacaatgattgattgtaacttttactgacatgtgttgtcataaaaacacacagcacatcaaatggttatgatgaatcacatgatacactgcctc |
177 |
Q |
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| T |
30357491 |
gtatatgacaatgattgattgtaacttttactgacatgtgttgtcataaaaacacacagcacatcaaatggttatgatgaatcacatgatacactgcctc |
30357590 |
T |
|
| Q |
178 |
tttctcatagaaaaatgtctgatgcaaatggaagttgggagtatcactacacgctacaaactattgaaaaagagtcaccatacaattaaacggtagttat |
277 |
Q |
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| T |
30357591 |
tttctcatagaaaaatgtctgatgcaaatggaagttgggagtatcactacacgctacaaactattgaaaaagagtcaccatacaattaaacggtagttat |
30357690 |
T |
|
| Q |
278 |
cagaataattataaacccacaaacatacagaaaaactcacaaacaggccagcaatgcaatgataaacgatatacgagtaaagaatataagttacccctcg |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30357691 |
cagaataattataaacccacaaacatacagaaaaactcacaaacaggccagcaatgcaatgataaacgatatacgagtaaagaatataagttacccctcg |
30357790 |
T |
|
| Q |
378 |
ctgtattcgcctcagaacttttgcaatgtccaaacgaccttcttcattaaatgctgaattccatcttcttgcacttaaagtcttgccagactgcggaaat |
477 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30357791 |
ctgtattcgtctcagaacttttgcaatgtccaaacgaccttcttcattaaatgctgaattccatcttcttgcacttaaagtcttgccagactgcggaaat |
30357890 |
T |
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| Q |
478 |
aaaaacaatgtataaatcacaagataaatttt |
509 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30357891 |
aaaaacaatgtataaatcacaagataaatttt |
30357922 |
T |
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