View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_10 (Length: 477)
Name: NF11654_low_10
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 192 - 457
Target Start/End: Complemental strand, 26007770 - 26007505
Alignment:
| Q |
192 |
gtttctgtagttatatcccaagattacaaaccagataaagaactttagcacaaatgaaatttcaatttctattttcaatcacaaaatttagttacattat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26007770 |
gtttctgtagttatatcccaagattacaaaccagataaagaactttagcacaaatggaatttcaatttctattttcaatcacaaaatttagttacattat |
26007671 |
T |
|
| Q |
292 |
atcaaaactgataaatgtttctagttgatacaacaaacaacttcacaacttctaagnnnnnnncacaacaaatcagataaagaacttgagcacaaaatat |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26007670 |
atcaaaactgataaatgtttctagttgatacaacaaacaacttcacaacttctaagaaaaaaacacaacaaatcagataaagaacttgagcacaaaatat |
26007571 |
T |
|
| Q |
392 |
gaaggatgaatacttactcatgatgatggggaaacagtttcacagagatggtgtcgattgctccga |
457 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26007570 |
gaaggatgaatacttactcatgatgatggggaaacagtttcaaagagatggtgtcgattgctccga |
26007505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 192 - 457
Target Start/End: Complemental strand, 26126156 - 26125891
Alignment:
| Q |
192 |
gtttctgtagttatatcccaagattacaaaccagataaagaactttagcacaaatgaaatttcaatttctattttcaatcacaaaatttagttacattat |
291 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126156 |
gtttctgtagttatatcccaagattacaaaccagataaagaactttagcacaaatggaatttcaatttctattttcaatcacaaaatttagttacattat |
26126057 |
T |
|
| Q |
292 |
atcaaaactgataaatgtttctagttgatacaacaaacaacttcacaacttctaagnnnnnnncacaacaaatcagataaagaacttgagcacaaaatat |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26126056 |
atcaaaactgataaatgtttctagttgatacaacaaacaacttcacaacttctaagaaaaaaacacaacaaatcagataaagaacttgagcacaaaatat |
26125957 |
T |
|
| Q |
392 |
gaaggatgaatacttactcatgatgatggggaaacagtttcacagagatggtgtcgattgctccga |
457 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26125956 |
gaaggatgaatacttactcatgatgatggggaaacagtttcaaagagatggtgtcgattgctccga |
26125891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 192 - 457
Target Start/End: Complemental strand, 25573228 - 25572963
Alignment:
| Q |
192 |
gtttctgtagttatatcccaagattacaaaccagataaagaactttagcacaaatgaaatttcaatttctattttcaatcacaaaatttagttacattat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25573228 |
gtttctgtagttatatcccaagattacaaaccagataaagaactttagcacaaatggaatttcaatttctattttcaatcacaaaatttagttacattat |
25573129 |
T |
|
| Q |
292 |
atcaaaactgataaatgtttctagttgatacaacaaacaacttcacaacttctaagnnnnnnncacaacaaatcagataaagaacttgagcacaaaatat |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25573128 |
atcaaaactgataaatgtttctagttgatacaacaaacaacttcacaacttctaagaaaaaaacacaacaaatcagataaagaacttgagcacaaaatat |
25573029 |
T |
|
| Q |
392 |
gaaggatgaatacttactcatgatgatggggaaacagtttcacagagatggtgtcgattgctccga |
457 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
25573028 |
gaaggatgaatacttactcatgatgatggggaaacagtttcatagagattgtgtcgattgctccga |
25572963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 25573410 - 25573304
Alignment:
| Q |
11 |
cagagacaaagtaatcaaaagacttacaatttacagaggccctcagtataaatatatatgttaacttgcagatgctccaaaatcgtgacagaagccacat |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25573410 |
cagacacaaagtaatcaaaagacttacaatttacagaggccctcagtataaatctatatgttaacttgcagatgctccaaaatcgtgacagaagccacat |
25573311 |
T |
|
| Q |
111 |
gtcatgc |
117 |
Q |
| |
|
||||||| |
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|
| T |
25573310 |
gtcatgc |
25573304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 26007951 - 26007845
Alignment:
| Q |
11 |
cagagacaaagtaatcaaaagacttacaatttacagaggccctcagtataaatatatatgttaacttgcagatgctccaaaatcgtgacagaagccacat |
110 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26007951 |
cagacacaaagtaatcaaaagacttacaatttacagaggccctcagtataaatctatatgttaacttgcagatgctccaaaatcgtgacagaagccacat |
26007852 |
T |
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| Q |
111 |
gtcatgc |
117 |
Q |
| |
|
||||||| |
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| T |
26007851 |
gtcatgc |
26007845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 26126337 - 26126231
Alignment:
| Q |
11 |
cagagacaaagtaatcaaaagacttacaatttacagaggccctcagtataaatatatatgttaacttgcagatgctccaaaatcgtgacagaagccacat |
110 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126337 |
cagacacaaagtaatcaaaagacttacaatttacagaggccctcagtataaatctatatgttaacttgcagatgctccaaaatcgtgacagaagccacat |
26126238 |
T |
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| Q |
111 |
gtcatgc |
117 |
Q |
| |
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||||||| |
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|
| T |
26126237 |
gtcatgc |
26126231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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