View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11654_low_11 (Length: 475)
Name: NF11654_low_11
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_11 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 11 - 475
Target Start/End: Original strand, 34639802 - 34640262
Alignment:
| Q |
11 |
agccaaaaagagcttatcatgagaatatttatgcactgtactaaaggttcaaagggcactagaatagacttagttggtgtactctcaatttctaaaaata |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34639802 |
agccaaaaagagcttatcatgagtatatttatgcactgtactaaaggttcaaagggcactagaatagacttagttggtgtactctcaatttctaaaaata |
34639901 |
T |
|
| Q |
111 |
gatactcgatcaaagagataaatacaaaagtagatggtagatcgatctatcatcattggttttcttnnnnnnnntataaatcttggtataaaagaaatgt |
210 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
34639902 |
gatactcaatcaaagagataaatacaaaagtagatggtagatcgatctatcatcatttgttttct--aaaaaaatataaatcttggtataaaagaaatgt |
34639999 |
T |
|
| Q |
211 |
gtaattgattcaaaaccgaattaattttacctgtatgaaatctttgactttttgaagcaagaaatgcccgtaagttacaacgtcatagctttttcttcgt |
310 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34640000 |
gtaattgattcaaaacctaattaatt--acctgtatgaaatctttgactttttgaagcaagaaatgcccgtaagttacaacgtcatagctttttcttcgt |
34640097 |
T |
|
| Q |
311 |
attggtagcgtaaaataattaataacgaagtcatttgtaccagcacttatgaaaaataatgcgttattcatatgattttcagttctttgcctaccaagct |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34640098 |
attggtagcgtaaaataattaataacgaagtcatttgtaccagcacttatgaaaaataatgcgttattcatatgattttcagttctttgcctaccaagct |
34640197 |
T |
|
| Q |
411 |
tagtctccaacctctttttgtattgtttgaaatattccatttgctttgatattggcaccacattc |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34640198 |
tagtctccaacctctttttgtattgtttgaaatattccatttgctttgatattggcaccacattc |
34640262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University