View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_13 (Length: 466)
Name: NF11654_low_13
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 26417958 - 26417516
Alignment:
| Q |
1 |
ttcatggcgggtttctgtgagtgagggaatgtgttcacaatagttttgatgtggctaaaggggatgtacttgggttaatgttatgtaatgtagaagatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26417958 |
ttcatggcgggtttctgtgagtgagggaatgtgttcacaatagttttgatgtggctaaaggggatgtacttgggttaatgttatgtaatgtagaagatta |
26417859 |
T |
|
| Q |
101 |
gtggattatgggttgaatgagaatgccgaaggagagttactggcttcaagaagatgggtactagttagtttctggttatggtttggtttttggattacgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26417858 |
gtggattatgggttgaatgagaatgccgaaggagagttactggcttcaagaagatgggtactagttagtttctggttgtggtttggtttttggattacgg |
26417759 |
T |
|
| Q |
201 |
atgatggtggaggtagtgactatggaggtctaatgttggtctgctgtgatggtttatggtgtttcctttttacggatattttgacgatgagtgtctgatg |
300 |
Q |
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| T |
26417758 |
atgatggtggaggtagtgactatggaggtctaatgttggtctgctgtgatggtttatggtgtttcctttttacggatattttgaagatgagtgtctgatg |
26417659 |
T |
|
| Q |
301 |
tagagaatgggttttcttcctaatagtgcagtgattaaaatttggcagggtcccgagtctctttagtgatgcatgtagctcaacccctgcttctaatttc |
400 |
Q |
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| T |
26417658 |
tagagaatgggttttcttcctaatagtccagtgattaaaatttggcagggtcccgagtccctttagtgatgcatgtacctcaacccctgcttctaatttc |
26417559 |
T |
|
| Q |
401 |
aagtgcggaaaactcagatctttgggtagtttggagtatagat |
443 |
Q |
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| T |
26417558 |
aagtgcggaaaactcagatctttgggtagtttggagtatagat |
26417516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 51 - 431
Target Start/End: Original strand, 27983070 - 27983435
Alignment:
| Q |
51 |
gtggctaaaggggatgtacttgggttaatgttatgtaatgtagaagattagtggattatgggttgaatgagaatgccgaaggagagttactggcttcaag |
150 |
Q |
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||||||||||| | ||||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||| ||||||| |
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| T |
27983070 |
gtggctaaaggtggtgtactttggttaatgttatgtaatgcagaagagtagtggattatggtgtgaatgagaatgttgaaggagagttactgccttcaag |
27983169 |
T |
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| Q |
151 |
aagatgggtactagttagtttctggttatggtttggtttttggattacggatgatggtggaggtagtgactatggaggtctaatgttggtctgctgtgat |
250 |
Q |
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| || |||||||||||||||||||||| ||||||||||| | ||| | || |||||||||| ||||||| |||||| ||||||||| |
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| T |
27983170 |
aggaagggtactagttagtttctggttgtggtttggtttctcgatgaagggtgatggtgga---------------ggtctaaggttggtttgctgtgat |
27983254 |
T |
|
| Q |
251 |
ggtttatggtgtttcctttttacggatattttgacgatgagtgtctgatgtagagaatgggttttcttcctaatagtgcagtgattaaaatttggcaggg |
350 |
Q |
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| T |
27983255 |
ggtttatggtgtttccattttagggctattttgatgataagtgtctgatgtagagaatgggttttcttcctagtagtgcagcgatcaaaatctggcaggg |
27983354 |
T |
|
| Q |
351 |
tcccgagtctctttagtgatgcatgtagctcaacccctgcttctaatttcaagtgcggaaaactcagatctttgggtagtt |
431 |
Q |
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| T |
27983355 |
tcccgagtccctttagtgatgcatgtagctcaaccccaacttctaatttcaagtgcagaaaactcaaatattggggtagtt |
27983435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 51 - 431
Target Start/End: Original strand, 28069600 - 28069965
Alignment:
| Q |
51 |
gtggctaaaggggatgtacttgggttaatgttatgtaatgtagaagattagtggattatgggttgaatgagaatgccgaaggagagttactggcttcaag |
150 |
Q |
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||||||||||| | ||||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||| ||||||| |
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| T |
28069600 |
gtggctaaaggtggtgtactttggttaatgttatgtaatgcagaagagtagtggattatggtgtgaatgagaatgttgaaggagagttactgccttcaag |
28069699 |
T |
|
| Q |
151 |
aagatgggtactagttagtttctggttatggtttggtttttggattacggatgatggtggaggtagtgactatggaggtctaatgttggtctgctgtgat |
250 |
Q |
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| || |||||||||||||||||||||| ||||||||||| | ||| | || |||||||||| ||||||| |||||| ||||||||| |
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| T |
28069700 |
aggaagggtactagttagtttctggttgtggtttggtttctcgatgaagggtgatggtgga---------------ggtctaaggttggtttgctgtgat |
28069784 |
T |
|
| Q |
251 |
ggtttatggtgtttcctttttacggatattttgacgatgagtgtctgatgtagagaatgggttttcttcctaatagtgcagtgattaaaatttggcaggg |
350 |
Q |
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|||||||||||||||| ||||| || |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||| |
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| T |
28069785 |
ggtttatggtgtttccattttagggctattttgatgataagtgtctgatgtagagaatgggttttcttcctagtagtgcagcgatcaaaatctggcaggg |
28069884 |
T |
|
| Q |
351 |
tcccgagtctctttagtgatgcatgtagctcaacccctgcttctaatttcaagtgcggaaaactcagatctttgggtagtt |
431 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || || |||||||| |
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| T |
28069885 |
tcccgagtccctttagtgatgcatgtagctcaaccccaacttctaatttcaagtgcagaaaactcaaatattggggtagtt |
28069965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27982994 - 27983047
Alignment:
| Q |
1 |
ttcatggcgggtttctgtgagtgagggaatgtgttcacaatagttttgatgtgg |
54 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27982994 |
ttcatggcgggtttctgcgagtgagggaatgtgttcacaatagttttgatgtgg |
27983047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28069524 - 28069577
Alignment:
| Q |
1 |
ttcatggcgggtttctgtgagtgagggaatgtgttcacaatagttttgatgtgg |
54 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28069524 |
ttcatggcgggtttctgcgagtgagggaatgtgttcacaatagttttgatgtgg |
28069577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 443
Target Start/End: Original strand, 27981992 - 27982080
Alignment:
| Q |
355 |
gagtctctttagtgatgcatgtagctcaacccctgcttctaatttcaagtgcggaaaactcagatctttgggtagtttggagtatagat |
443 |
Q |
| |
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||||| |||||||||| ||| |||||||||||||||||| |||| ||||| |||||||| | || |||||||||| ||||||||| |
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| T |
27981992 |
gagtccctttagtgatacatatagctcaacccctgcttccaattctgagtgcacaaaactcatacattggggtagtttgaagtatagat |
27982080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 443
Target Start/End: Original strand, 28068522 - 28068610
Alignment:
| Q |
355 |
gagtctctttagtgatgcatgtagctcaacccctgcttctaatttcaagtgcggaaaactcagatctttgggtagtttggagtatagat |
443 |
Q |
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||||| |||||||||| ||| |||||||||||||||||| |||| ||||| |||||||| | || |||||||||| ||||||||| |
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| T |
28068522 |
gagtccctttagtgatacatatagctcaacccctgcttccaattctgagtgcacaaaactcatacattggggtagtttgaagtatagat |
28068610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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