View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_17 (Length: 440)
Name: NF11654_low_17
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 157 - 370
Target Start/End: Original strand, 36726478 - 36726691
Alignment:
| Q |
157 |
caattgaacgcagtttaaccatctgtttctaagcttccaaggaactaaagaaacatttttgaaggctttgatcaccaattttgaatctacttccagccat |
256 |
Q |
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| T |
36726478 |
caattgaacgcagtttaaccatctgtttctaagcttccaaggaactaaagaaacattttttaaggctttgatcaccaattctgaatctgcttccagccat |
36726577 |
T |
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| Q |
257 |
aaattcgaccattgatgtgagtttgcaatctctattgctctcatggctccagacaactcagcatgcaaggaatttcccaaacatgtattttcaccaaagc |
356 |
Q |
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| T |
36726578 |
aatttcgaccgctgatgtgagtttgcaatctctattggtctcatggctccagacaactcgacatgcaaggagtttcccaaacctgtattttcaccaaagc |
36726677 |
T |
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| Q |
357 |
aaagtagaaaatcc |
370 |
Q |
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| T |
36726678 |
aaagtagaaaatcc |
36726691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 25276577 - 25276704
Alignment:
| Q |
20 |
tatttgtgatgtgtgacttgatggagtaaaagcttcgtacgagtgcaattggagaaccattgtcttatgttggcatttactttgtttttccaagttgcca |
119 |
Q |
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| T |
25276577 |
tatttgtgatgtgtgacttgatggagtaaaagcttcgtacgagtgcaattggagaaccattgtcttatgttggcatttactttgtttttccaagttgcca |
25276676 |
T |
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| Q |
120 |
actcagtagtgagtagtggccagaaggc |
147 |
Q |
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| T |
25276677 |
actcagtagtgagtagtagccagaaggc |
25276704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 23881498 - 23881422
Alignment:
| Q |
344 |
ttttcaccaaagcaaagtagaaaatccgatttactatctctgaaaattcctccacaagaggagagattaccatttgt |
420 |
Q |
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| T |
23881498 |
ttttctccaaagcaaagcaaaaaatccgaattactatctctgaagattcccccacaggaagattgattactatttgt |
23881422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 22830616 - 22830660
Alignment:
| Q |
377 |
ctatctctgaaaattcctccacaagaggagagattaccatttgtg |
421 |
Q |
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| T |
22830616 |
ctatctctaaaaattcctccacaaaaggagaggttgccatttgtg |
22830660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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