View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_18 (Length: 396)
Name: NF11654_low_18
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 107 - 377
Target Start/End: Original strand, 22866401 - 22866671
Alignment:
| Q |
107 |
agtgtctatgtctcctattggaatttaggtattttgtacgttgtttttagtctttacagcagcagctattgctatccgcgattaacaacatagctaagaa |
206 |
Q |
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| T |
22866401 |
agtgtctatgtatcctattggaatttaagtagtttgtacgttgtttttagtctttacagcagaagctattgctatccgcgattaacaacatagctaagaa |
22866500 |
T |
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| Q |
207 |
gcaattgtcaagattcaaatgtgtagaattggaaatcatatgacatacttatgaacgcatggtctaaaatttaaagtacacaatcaaggtgatatttgaa |
306 |
Q |
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| T |
22866501 |
gcaattgtcaagattcaaatgtgtagaattggaaatcatatgacatacttatgaacgcatggtctaaaatttaaagtacacaatcaaggtgatatttgaa |
22866600 |
T |
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| Q |
307 |
tcattcaaaagttcaaaaatagaacaaccaaagacattttcacccatattgatgaaaccagctacatgacc |
377 |
Q |
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| T |
22866601 |
ttattcaaaagttctaaaatagaacaaccaaagacattttcacccatattgatgaaaccagctacgtgacc |
22866671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 22866282 - 22866358
Alignment:
| Q |
1 |
catgaagggccaagatcgctccnnnnnnn-tgacgagccaaaatcgcacaatcgcgatccttggggagcaaaggtga |
76 |
Q |
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| T |
22866282 |
catgaagggccaagatcgctccaaaaataatgacgagccaaaatcgcacaatcgcgatccttggggagcaaaagtga |
22866358 |
T |
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