View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11654_low_20 (Length: 357)

Name: NF11654_low_20
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11654_low_20
NF11654_low_20
[»] chr1 (9 HSPs)
chr1 (1-339)||(10549089-10549427)
chr1 (194-339)||(5959956-5960101)
chr1 (10-170)||(16766461-16766621)
chr1 (194-306)||(50516904-50517016)
chr1 (205-295)||(16766313-16766403)
chr1 (194-306)||(45909364-45909476)
chr1 (194-306)||(33803335-33803447)
chr1 (205-306)||(44711606-44711707)
chr1 (152-194)||(5959872-5959914)
[»] chr6 (1 HSPs)
chr6 (4-191)||(24131843-24132030)
[»] chr2 (10 HSPs)
chr2 (194-328)||(10925748-10925882)
chr2 (206-336)||(26264401-26264530)
chr2 (196-306)||(38621493-38621603)
chr2 (32-193)||(26264189-26264350)
chr2 (194-307)||(30213492-30213605)
chr2 (194-306)||(29809920-29810032)
chr2 (203-306)||(17311013-17311116)
chr2 (206-270)||(23937528-23937592)
chr2 (44-193)||(10925560-10925709)
chr2 (73-183)||(17311174-17311284)
[»] chr7 (5 HSPs)
chr7 (194-310)||(25010984-25011100)
chr7 (194-306)||(19217143-19217255)
chr7 (222-306)||(15892016-15892100)
chr7 (227-306)||(41255977-41256056)
chr7 (226-295)||(8109414-8109483)
[»] chr5 (10 HSPs)
chr5 (26-179)||(31049108-31049261)
chr5 (44-191)||(31044441-31044588)
chr5 (194-336)||(31059600-31059742)
chr5 (194-336)||(31044256-31044400)
chr5 (194-336)||(31048911-31049055)
chr5 (194-306)||(38966534-38966646)
chr5 (206-295)||(25761720-25761809)
chr5 (194-295)||(20235178-20235279)
chr5 (224-306)||(34832436-34832518)
chr5 (44-179)||(31059795-31059931)
[»] chr8 (2 HSPs)
chr8 (194-306)||(9139076-9139188)
chr8 (194-295)||(23254751-23254852)
[»] chr3 (5 HSPs)
chr3 (194-306)||(52970956-52971068)
chr3 (221-288)||(5158769-5158836)
chr3 (73-190)||(52971110-52971227)
chr3 (236-306)||(48094747-48094817)
chr3 (143-191)||(5158904-5158952)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 10549089 - 10549427
Alignment:
Q  1 gagaaatagataaagccaaattcaatggtgaagacaatcatgcttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgca 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| ||| ||||| |||||||    
T  10549089 gagaaatagataatgccaaattcaatggtgaagacaatcatgcttgcatgagaggatattgtgaatactgatacggaggaagcatatgttgataattgca 10549188  T
Q  101 agcggttcaaaattgtgtgcgataaatttcccaagtttgtataatatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaagtacaaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10549189 agcggttcaaaattgtgtgcgataaatttcccaagtttgtataatatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaagtacaaaca 10549288  T
Q  201 gtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctaca 300  Q
     |||||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10549289 atgctgaatttgcaaacagccggttgaaaaagcatctgactagtagtatgagtgatttaagtacaaactgggaatccgttcacaacatgctagagctaca 10549388  T
Q  301 acatactcagctgcacgcttccttccagacgagcattat 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10549389 acatactcagctgcacgcttccttccagacgagcattat 10549427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 194 - 339
Target Start/End: Original strand, 5959956 - 5960101
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    ||||| || ||||||| |||||||| |||||||||||||||| |||||||||| |||| |||||||||||||||||   ||||||||||||||||| |||    
T  5959956 acaaatagagctgaatttgcacacaaccggttgaaaaagtatatgactagtagcatgagtgatttaagtacaaactataaatccgttcacaacatgttag 5960055  T
Q  294 agctacaacatactcagctgcacgcttccttccagacgagcattat 339  Q
     |  ||| ||||||||  | |||||||||||  |||||||||||||    
T  5960056 tgtcacaccatactcaaatacacgcttccttttagacgagcattat 5960101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 16766621 - 16766461
Alignment:
Q  10 ataaagccaaattcaatggtgaagacaatcatgcttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttca 109  Q
    |||||||||||||||||||||||||| ||||||| |||||| ||||||||  || |||||||||||||| ||   || ||||| ||||| || |||||||    
T  16766621 ataaagccaaattcaatggtgaagacgatcatgcgtgcatgggaggatattatggattctgatacggaaaaaacgtatgttgataattgtaaccggttca 16766522  T
Q  110 aaattgtgtgcgataaatttcccaagtttgtataatatgttaaaagtacaattttgggtcc 170  Q
    || |||| ||||| ||||  | |||||||||  |||||||| ||||||| || ||||||||    
T  16766521 aagttgtttgcgaaaaatggcacaagtttgtggaatatgttgaaagtactatgttgggtcc 16766461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 50516904 - 50517016
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    |||||||  |||||||||||||||   |||||||||||||| |||| ||||||||||  |||||| |||||||||||| |||||||||| ||||||||||    
T  50516904 acaaacatagctgaatctgcacacgatcggttgaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctag 50517003  T
Q  294 agctacaacatac 306  Q
    || | ||||||||    
T  50517004 agttgcaacatac 50517016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 295
Target Start/End: Complemental strand, 16766403 - 16766313
Alignment:
Q  205 tgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagag 295  Q
    |||||||||| ||| |||||||||||| ||||||||||  |  |||  ||||||||||||||||||||||||||||||| |||||||||||    
T  16766403 tgaatctgcatacaaccggttgaaaaactatctgactaacatcatgggtgatttaagtacaaactgggaatccgttcacgacatgctagag 16766313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 306
Target Start/End: Complemental strand, 45909476 - 45909364
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    |||||||| |||||||||||||||   |||||||||| ||| |||| ||||||||||  |||||| |||||||||||| |||| ||| | ||||||||||    
T  45909476 acaaacagagctgaatctgcacacgctcggttgaaaaggtacctgagtagtagtatgggtgatttgagtacaaactggcaatctgttaataacatgctag 45909377  T
Q  294 agctacaacatac 306  Q
    || | ||||||||    
T  45909376 agttgcaacatac 45909364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 33803335 - 33803447
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    |||||||| ||||||||||| |||   ||||||||||||| | ||| ||||||||||  |||||| |||| ||||||| |||| ||||| ||||||||||    
T  33803335 acaaacagagctgaatctgcgcacgctcggttgaaaaagtgtttgagtagtagtatgggtgatttgagtaaaaactggaaatctgttcataacatgctag 33803434  T
Q  294 agctacaacatac 306  Q
    || | ||||||||    
T  33803435 agttgcaacatac 33803447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 44711707 - 44711606
Alignment:
Q  205 tgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacat 304  Q
    ||||||||||| |   |||||||||||||| |||| ||||||||||  | |||| |||||||||||| |||||||| | |||||||||||| | ||||||    
T  44711707 tgaatctgcactcgctcggttgaaaaagtacctgagtagtagtatgggtaatttgagtacaaactggcaatccgttaataacatgctagagttgcaacat 44711608  T
Q  305 ac 306  Q
    ||    
T  44711607 ac 44711606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 5959872 - 5959914
Alignment:
Q  152 aaagtacaattttgggtccgatgaaggagaagattgtgaagta 194  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  5959872 aaagtacaattttgggtccggtgaaggagaagattgtgaagta 5959914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 24132030 - 24131843
Alignment:
Q  4 aaatagataaagccaaattcaatggtgaagacaatcatgcttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagc 103  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||| |||||||| ||| ||||||||| |||||||  ||| ||||| |||||||  |    
T  24132030 aaatatataaagccaaattcaatggtgaagacgatcatgcgtgcatgggaggatattgtggattctgatatggaagaaacatatgttgataattgcagcc 24131931  T
Q  104 ggttcaaaattgtgtgcgataaatttcccaagtttgtataatatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaa 191  Q
    |||||||| |||| ||||| ||||  | |||||||||  |||||||  ||||||| ||||||||||  || |||||||||||||||||    
T  24131930 ggttcaaagttgtttgcgaaaaatggctcaagtttgtggaatatgtagaaagtactattttgggtctaatcaaggagaagattgtgaa 24131843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 194 - 328
Target Start/End: Original strand, 10925748 - 10925882
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    |||||||| ||| |||||||||| | ||||| ||||||||||||| |||||||| ||  ||||||||||||||||||| | |||||||||||||||||||    
T  10925748 acaaacagagctaaatctgcacataaccggtcgaaaaagtatctggctagtagtgtgggtgatttaagtacaaactggaactccgttcacaacatgctag 10925847  T
Q  294 agctacaacatactcagctgcacgcttccttccag 328  Q
    ||  ||||||||||||| | |||||||||||||||    
T  10925848 agtcacaacatactcagatacacgcttccttccag 10925882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 336
Target Start/End: Original strand, 26264401 - 26264530
Alignment:
Q  206 gaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacata 305  Q
    |||| ||||||||||  |||||||||||||||||||| |||||||   |||| |||||||||| || |||||||||||| |||| ||||| |||||||||    
T  26264401 gaatatgcacacagcatgttgaaaaagtatctgactaatagtatgggcgattcaagtacaaacaggaaatccgttcacagcatg-tagagttacaacata 26264499  T
Q  306 ctcagctgcacgcttccttccagacgagcat 336  Q
    || || | |||||||||||| ||||||||||    
T  26264500 ctaagatacacgcttccttctagacgagcat 26264530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 38621493 - 38621603
Alignment:
Q  196 aaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagag 295  Q
    |||||| ||||||||||||||||  ||||||| |||||| |||| ||||||||||  |||||| |||||||||||| |||||||||| ||||||||||||    
T  38621493 aaacagagctgaatctgcacacactcggttgagaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagag 38621592  T
Q  296 ctacaacatac 306  Q
     | ||||||||    
T  38621593 ttgcaacatac 38621603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 193
Target Start/End: Original strand, 26264189 - 26264350
Alignment:
Q  32 agacaatcatgcttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcc 131  Q
    ||||| ||||||||| ||  ||||||||||||||||| ||||| ||  ||| ||| ||||| |||||||| |  |||||| |||| ||| | ||| || |    
T  26264189 agacagtcatgcttgaataggaggatatcgtgaattccgatacagagcaagcatatgttgataattgcaaccaattcaaagttgtatgcaaaaaaatttc 26264288  T
Q  132 caagtttgtataatatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaagt 193  Q
    |||||||  |||||||||| ||| |||||||||||||| | ||||||||| |||||||||||    
T  26264289 caagttttcataatatgttgaaaatacaattttgggtcaggtgaaggagatgattgtgaagt 26264350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 30213492 - 30213605
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    |||||||| |||||||||||||||   |||||||||||||| |||| ||||||||||  |||||| |||||||||||| |||| ||||| |||||| |||    
T  30213492 acaaacagagctgaatctgcacacgctcggttgaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatctgttcataacatggtag 30213591  T
Q  294 agctacaacatact 307  Q
    || | |||||||||    
T  30213592 agttgcaacatact 30213605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 29809920 - 29810032
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    |||||||| |||||||||||||||   | ||||||||||||| ||| ||||||||||  | |||| |||||||||||| |||||||||| |||||||||     
T  29809920 acaaacagagctgaatctgcacacgctctgttgaaaaagtatttgagtagtagtatgggtcatttgagtacaaactggaaatccgttcataacatgctaa 29810019  T
Q  294 agctacaacatac 306  Q
    || | ||||||||    
T  29810020 agttgcaacatac 29810032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 17311116 - 17311013
Alignment:
Q  203 gctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaac 302  Q
    |||||||||||||||   ||||||||||||||| ||| ||||||||||  |||||| |||||||||| | |||||||||| ||||| |||||| | ||||    
T  17311116 gctgaatctgcacacgctcggttgaaaaagtatttgagtagtagtatgggtgatttgagtacaaactagcaatccgttcataacattctagagttgcaac 17311017  T
Q  303 atac 306  Q
    ||||    
T  17311016 atac 17311013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 23937592 - 23937528
Alignment:
Q  206 gaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactg 270  Q
    |||||||||||||  ||||||||||||||||||| |||||||||| ||||| |||||||||||||    
T  23937592 gaatctgcacacactcggttgaaaaagtatctgaatagtagtatggatgatctaagtacaaactg 23937528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 193
Target Start/End: Original strand, 10925560 - 10925709
Alignment:
Q  44 ttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcccaagtttgtata 143  Q
    ||||||| ||||||||||||||||| |||||  |  ||  ||| ||||| |||||||| |  |||||| |||| ||| | |||||||| |||||| |  |    
T  10925560 ttgcatgggaggatatcgtgaattccgatacatagcaaccatatgttgataattgcaacctattcaaagttgtatgcaacaaatttcctaagtttttgga 10925659  T
Q  144 atatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaagt 193  Q
    ||||||| ||| |  ||||||||||| ||||||||||||| |||||||||    
T  10925660 atatgttgaaaatgaaattttgggtctgatgaaggagaaggttgtgaagt 10925709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 17311284 - 17311174
Alignment:
Q  73 acggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcccaagtttgtataatatgttaaaagtacaattttgggtccga 172  Q
    ||||| |||| |||| |||| ||||| || ||||||||| || | ||||  ||||||||||||||| |  |||||||| |||  |||||||||| ||||     
T  17311284 acggaggaagcatacattgataattggaaccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgttgaaaagacaattttggatccgg 17311185  T
Q  173 tgaaggagaag 183  Q
    | |||||||||    
T  17311184 ttaaggagaag 17311174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 194 - 310
Target Start/End: Complemental strand, 25011100 - 25010984
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    |||||||  ||||||| ||||||||||||||| ||||||||||||| ||||||||||| | ||||||||||||||||| |||| |||||||||||| |||    
T  25011100 acaaacatagctgaatttgcacacagccggttaaaaaagtatctgattagtagtatgagtaatttaagtacaaactggaaatctgttcacaacatgttag 25011001  T
Q  294 agctacaacatactcag 310  Q
    || ||||| ||||||||    
T  25011000 agttacaatatactcag 25010984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 19217143 - 19217255
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    |||||||| | |||||||||||||   ||||||||||||||| ||| ||||||||||  |||||| |||||||||||| |||||||||| ||||||||||    
T  19217143 acaaacagagttgaatctgcacacgttcggttgaaaaagtatttgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctag 19217242  T
Q  294 agctacaacatac 306  Q
    || | ||||||||    
T  19217243 agttgcaacatac 19217255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 15892016 - 15892100
Alignment:
Q  222 ggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacatac 306  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||  | ||||||||| | ||||||||    
T  15892016 ggttgaaaaagtatctgagtagtagtatgggtgatttaagtacaaactggaaatccgttcatgagatgctagagttgcaacatac 15892100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 41256056 - 41255977
Alignment:
Q  227 aaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacatac 306  Q
    |||||||| |||| ||||||||||  |||||| |||||||||||| |||||||| | |||||||||||| | ||||||||    
T  41256056 aaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttaataacatgctagagttgcaacatac 41255977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 8109414 - 8109483
Alignment:
Q  226 gaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagag 295  Q
    |||||||||| ||  ||||||||||| ||||||| |||| |||  || |||||||||||||||| |||||    
T  8109414 gaaaaagtatttgtatagtagtatgagtgatttatgtacgaaccaggcatccgttcacaacatgttagag 8109483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 179
Target Start/End: Complemental strand, 31049261 - 31049108
Alignment:
Q  26 tggtgaagacaatcatgcttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataa 125  Q
    ||||||||||  | ||| ||||||| ||||||||||||||||||||||| ||  ||| ||| ||||| |||||||| ||||||||| |||| ||| | ||    
T  31049261 tggtgaagacggttatggttgcatgggaggatatcgtgaattctgatacagagcaagcatatgttgataattgcaaccggttcaaagttgtatgccacaa 31049162  T
Q  126 atttcccaagtttgtataatatgttaaaagtacaattttgggtccgatgaagga 179  Q
    |||||| ||||||||  |||||||| ||| || |||||||||| || |||||||    
T  31049161 atttcctaagtttgtgaaatatgttgaaaataaaattttgggttcggtgaagga 31049108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 31044588 - 31044441
Alignment:
Q  44 ttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcccaagtttgtata 143  Q
    ||||||| |||||||||||||||| |||||| ||  ||| ||| ||||| |||||||| ||||||||| |||| ||| | |||||||| |||||| |  |    
T  31044588 ttgcatgggaggatatcgtgaattttgatacagagcaagcatatgttgataattgcaaccggttcaaagttgtatgccacaaatttcctaagtttttgaa 31044489  T
Q  144 atatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaa 191  Q
    ||||||| ||| || |||||||||| || |||||||  ||||||||||    
T  31044488 atatgttgaaaatataattttgggttcggtgaaggaatagattgtgaa 31044441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 336
Target Start/End: Complemental strand, 31059742 - 31059600
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgacta--gtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgct 291  Q
    |||||||| || |||| |||||| || ||||||||||||||||| ||||  ||||||||  ||| ||||||||||| ||| | |||||||||||||||||    
T  31059742 acaaacagagcagaatatgcacatagacggttgaaaaagtatcttactatagtagtatgggtgaattaagtacaaaatggaactccgttcacaacatgct 31059643  T
Q  292 agagctacaacatactcagctgcacgcttccttccagacgagcat 336  Q
      ||  ||||||||||||  | || ||||||||||||||||||||    
T  31059642 --agtcacaacatactcaaatacatgcttccttccagacgagcat 31059600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 336
Target Start/End: Complemental strand, 31044400 - 31044256
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgacta--gtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgct 291  Q
    |||||||| || |||| ||||||||| | ||||||||||||||| ||||  ||||||||  ||| ||||||||||| ||| | |||  ||||||||||||    
T  31044400 acaaacagagcagaatatgcacacagaccgttgaaaaagtatcttactatagtagtatgggtgaattaagtacaaaatggaactccactcacaacatgct 31044301  T
Q  292 agagctacaacatactcagctgcacgcttccttccagacgagcat 336  Q
    ||||  ||||||||||||  | || ||||||||| ||||||||||    
T  31044300 agagtcacaacatactcaaatacatgcttccttctagacgagcat 31044256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 336
Target Start/End: Complemental strand, 31049055 - 31048911
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgacta--gtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgct 291  Q
    |||||||| || |||| ||||||||| ||||| ||||||||||| ||||  ||||||||  ||| ||||||||||| ||| | ||| |||||||||||||    
T  31049055 acaaacagagcagaatatgcacacagacggttaaaaaagtatcttactatagtagtatgggtgaattaagtacaaaatggaactccattcacaacatgct 31048956  T
Q  292 agagctacaacatactcagctgcacgcttccttccagacgagcat 336  Q
    ||||  ||||||||||||  | ||  ||||||||| |||||||||    
T  31048955 agagtcacaacatactcaaatacattcttccttccggacgagcat 31048911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 38966534 - 38966646
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    ||||| || ||||||| |||||||   ||||||||||||||||||| ||||||||||  |||||| |||||||||||| || |||||||  |||||||||    
T  38966534 acaaatagagctgaatatgcacacgctcggttgaaaaagtatctgagtagtagtatgggtgattttagtacaaactggaaagccgttcatgacatgctag 38966633  T
Q  294 agctacaacatac 306  Q
    || | ||||||||    
T  38966634 agttgcaacatac 38966646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 25761720 - 25761809
Alignment:
Q  206 gaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagag 295  Q
    ||||||||||||   |||||||||||||| |||| ||||||||||  |||||| |||||||||||| |||||||||| |||||| |||||    
T  25761720 gaatctgcacacgctcggttgaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatggtagag 25761809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 20235279 - 20235178
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    |||||||| |||||||||||||||   | ||||||||||||  ||| ||||| ||||  |||||| |||||||||||| |||||||||| ||||| ||||    
T  20235279 acaaacagagctgaatctgcacacgctcagttgaaaaagtaattgagtagtaatatgggtgatttgagtacaaactggcaatccgttcataacatactag 20235180  T
Q  294 ag 295  Q
    ||    
T  20235179 ag 20235178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 34832518 - 34832436
Alignment:
Q  224 ttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacatac 306  Q
    |||||||||||  ||| ||||||||||   ||||| |||||||||||| |||||||||| |||||||||||| | ||||||||    
T  34832518 ttgaaaaagtacttgagtagtagtatgggagatttgagtacaaactggcaatccgttcataacatgctagagttgcaacatac 34832436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 31059931 - 31059795
Alignment:
Q  44 ttgcatgagaggatatcgtgaattctgatacggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcccaagtttgtata 143  Q
    ||||||| ||||||||| ||||||||||||| ||  ||  ||| ||||| ||||| || ||||||||| |||| ||| | |||||||| || ||| |  |    
T  31059931 ttgcatgggaggatatcatgaattctgatacagagcaaacatatgttgataattgtaaccggttcaaagttgtatgccacaaatttcctaaattttttga 31059832  T
Q  144 atatgtt-aaaagtacaattttgggtccgatgaagga 179  Q
    ||||||| |||| ||||||||||||| || |||||||    
T  31059831 atatgttgaaaaatacaattttgggttcggtgaagga 31059795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 306
Target Start/End: Complemental strand, 9139188 - 9139076
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    |||||||| | ||||| |||||||   || |||||||||||| ||| ||||||||||| |||||| |||||||||||| |||| ||||| ||||||||||    
T  9139188 acaaacagagttgaatgtgcacacgctcgattgaaaaagtatttgagtagtagtatgagtgatttgagtacaaactggcaatctgttcataacatgctag 9139089  T
Q  294 agctacaacatac 306  Q
    || | ||||||||    
T  9139088 agttgcaacatac 9139076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 23254751 - 23254852
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    |||||||| |||||||||| | ||   || |||| ||||||| ||| |||||||||  ||||||| |||||||||||| |||||||||| ||||||||||    
T  23254751 acaaacagagctgaatctgtagacgctcgattgagaaagtatttgagtagtagtatagatgatttgagtacaaactggcaatccgttcataacatgctag 23254850  T
Q  294 ag 295  Q
    ||    
T  23254851 ag 23254852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 306
Target Start/End: Complemental strand, 52971068 - 52970956
Alignment:
Q  194 acaaacagtgctgaatctgcacacagccggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctag 293  Q
    |||||||| |||||||||||| ||   |||||||||||| || ||| ||||||||||  |||||| |||||||||||| ||||||||   ||||||||||    
T  52971068 acaaacagagctgaatctgcagacgctcggttgaaaaagcatttgagtagtagtatgggtgatttgagtacaaactggaaatccgtttgtaacatgctag 52970969  T
Q  294 agctacaacatac 306  Q
    || | ||||||||    
T  52970968 agttgcaacatac 52970956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 5158836 - 5158769
Alignment:
Q  221 cggttgaaaaagtatctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacat 288  Q
    |||||||||| |||||| ||||||||||||| |||| ||| |||||||||  ||||||| ||||||||    
T  5158836 cggttgaaaaggtatctaactagtagtatgagtgatgtaattacaaactgaaaatccgtccacaacat 5158769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 52971227 - 52971110
Alignment:
Q  73 acggaagaagtatacgttgacaattgcaagcggttcaaaattgtgtgcgataaatttcccaagtttgtataatatgttaaaagtacaattttgggtccga 172  Q
    ||||| ||||||||| |||| ||||| |  ||||||||| || | ||||  ||||||||||||||| |  |||||||| |||  |||||||||| ||||     
T  52971227 acggaggaagtatacattgataattggacccggttcaaagttatatgcgcaaaatttcccaagtttttgaaatatgttgaaaagacaattttggatccgg 52971128  T
Q  173 tgaaggagaagattgtga 190  Q
    | ||||||||| ||||||    
T  52971127 tcaaggagaagtttgtga 52971110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 48094747 - 48094817
Alignment:
Q  236 ctgactagtagtatgaatgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacatac 306  Q
    |||| |||||||||   |||||| |||||||||||| |||||||| | |||||||||||| | ||||||||    
T  48094747 ctgagtagtagtataggtgatttgagtacaaactggcaatccgttaataacatgctagagttgcaacatac 48094817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 5158952 - 5158904
Alignment:
Q  143 aatatgttaaaagtacaattttgggtccgatgaaggagaagattgtgaa 191  Q
    |||||||| ||| | ||||||||||||||||| ||||||| ||||||||    
T  5158952 aatatgttgaaactgcaattttgggtccgatggaggagaaaattgtgaa 5158904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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