View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_22 (Length: 356)
Name: NF11654_low_22
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 135 - 346
Target Start/End: Original strand, 16267874 - 16268089
Alignment:
| Q |
135 |
gttgcattgacatcctgatctatgatgaaccacgacttgatt---ttctctaaacttatnnnnnnnntgaaagtaaagaattccatttaagaggggtaga |
231 |
Q |
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| T |
16267874 |
gttgcattgacatcctgatctatgatgaaccacgacttgattattttctctaaacttataaaaaaaatgaaagtaaagaattccatttaagaggggtaga |
16267973 |
T |
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| Q |
232 |
cacatgtacatgagttataaataatttaaaa-cttcatgatacatcaatttttaactcatgcctatctctcttttgaatagaactctttcaccacaattg |
330 |
Q |
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| T |
16267974 |
cacatgtacatgagttttaaataatttaaaaacttcatgatacatcaatttttaactcatgcctatctctcttttgaatagaactctttcaccacaattg |
16268073 |
T |
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| Q |
331 |
agctggtctacctatg |
346 |
Q |
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| T |
16268074 |
agctggtctacctatg |
16268089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 16267757 - 16267814
Alignment:
| Q |
18 |
attcataccttagttcgggctagtttccatatctttatcaatattccaacatgtatcc |
75 |
Q |
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| T |
16267757 |
attcataccttagttcgggctagtttccatatctttatcaatattccaacatgtatcc |
16267814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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