View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_23 (Length: 356)
Name: NF11654_low_23
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 8420514 - 8420846
Alignment:
| Q |
12 |
atgaatgggacttactctaatggtctctcagctgag--gcattatcaaaggaaactttgtgaaagctctgctcaccggggcattaatctatttggcaatg |
109 |
Q |
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| T |
8420514 |
atgaatgggacttactctaatggtctctcagctgagaggcattatcaaaggaaactttgtgaaagctctgctcaccggggcattaatctatttggcaatg |
8420613 |
T |
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| Q |
110 |
gaatcaggaatgaacaatctgatattttaaattgattatatcatcattgtaaacatgatttacaacaaggttgtcaaagagatttctcatatattcttca |
209 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8420614 |
gaatcaggaatgaacaatgtgatattttaaattgattatatcatcattgtaaacatgatttacaacaaggttgtcaaagagatttctcatatattcttca |
8420713 |
T |
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| Q |
210 |
tcaacatgggtagaagactgaagtgagtcatatcatatccgtagagaagcaaatagttgtgctaatgcattacagtctaatattgcttatagaaattgat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8420714 |
tcaacatgggtagaagactgaagtgagtcatatcatatccgtagagaagcaaatagttgtgctaatgcattacagtctaatattgcttattgaaattgat |
8420813 |
T |
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| Q |
310 |
aataacaggggt-gttcgtgtccttattgttgt |
341 |
Q |
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||||||| |||| ||| |||||||||||||||| |
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| T |
8420814 |
aataacatgggtggttagtgtccttattgttgt |
8420846 |
T |
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