View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11654_low_26 (Length: 353)

Name: NF11654_low_26
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11654_low_26
NF11654_low_26
[»] chr6 (3 HSPs)
chr6 (165-337)||(21481663-21481839)
chr6 (7-68)||(21481503-21481564)
chr6 (7-68)||(19701237-19701298)
[»] chr2 (3 HSPs)
chr2 (165-343)||(26661746-26661926)
chr2 (7-68)||(26661585-26661646)
chr2 (20-60)||(6050003-6050043)
[»] scaffold0586 (1 HSPs)
scaffold0586 (7-68)||(9670-9731)
[»] chr8 (2 HSPs)
chr8 (7-68)||(10637725-10637786)
chr8 (7-68)||(32717808-32717869)
[»] chr1 (2 HSPs)
chr1 (7-68)||(22893880-22893941)
chr1 (20-60)||(44306219-44306259)
[»] chr4 (1 HSPs)
chr4 (20-60)||(13893697-13893737)
[»] chr7 (2 HSPs)
chr7 (7-54)||(13331531-13331578)
chr7 (7-54)||(13342446-13342493)
[»] chr5 (1 HSPs)
chr5 (7-54)||(5672002-5672049)
[»] chr3 (1 HSPs)
chr3 (7-54)||(15761973-15762020)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 165 - 337
Target Start/End: Original strand, 21481663 - 21481839
Alignment:
Q  165 ccactgtttggcaattcttgtttttt-cctaatcatgaatcaatgcnnnnnnnnggttagagacaacttgtttttattaacccaccttc---taactttt 260  Q
    |||||||||||||||||||||||||| || ||||||||||||||||        | |||||||||||||||||||||||||||||||||   ||||||||    
T  21481663 ccactgtttggcaattcttgtttttttcccaatcatgaatcaatgcaaaaaaaagtttagagacaacttgtttttattaacccaccttcttctaactttt 21481762  T
Q  261 cccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataag 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481763 cccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataag 21481839  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 21481503 - 21481564
Alignment:
Q  7 ctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481503 ctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 21481564  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 19701237 - 19701298
Alignment:
Q  7 ctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 68  Q
    ||||||||||  ||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  19701237 ctaatttcattttaattcttccattactcaacatagatttgttgatttatatcatttctctg 19701298  T

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Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 165 - 343
Target Start/End: Original strand, 26661746 - 26661926
Alignment:
Q  165 ccactgtttggcaattcttgttttttcctaatcatgaatcaatgcnnnnnnnnggttagagacaacttgtttttattaacccaccttc---taacttttc 261  Q
    |||||||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||||||||||| ||||||||   ||||||||     
T  26661746 ccactgtttggcaattcttgttttttcccaatcatgaatcaatg-aaaaaaaaggttagagacaacttgtttttattaaaccaccttcttctaacttttt 26661844  T
Q  262 ccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagtctgtg 343  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26661845 ccaaaatatgctaataaccataacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagcctgtg 26661926  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 26661585 - 26661646
Alignment:
Q  7 ctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661585 ctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 26661646  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 6050003 - 6050043
Alignment:
Q  20 aattcttccattactcaacatagatttggtgattgatatca 60  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6050003 aattcttccattactcaacatagatttggtgattgatatca 6050043  T

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Target: scaffold0586 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 9670 - 9731
Alignment:
Q  7 ctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 68  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  9670 ctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 9731  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 10637725 - 10637786
Alignment:
Q  7 ctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 68  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  10637725 ctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 10637786  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 32717869 - 32717808
Alignment:
Q  7 ctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 68  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  32717869 ctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 32717808  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 22893880 - 22893941
Alignment:
Q  7 ctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 68  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  22893880 ctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 22893941  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 44306219 - 44306259
Alignment:
Q  20 aattcttccattactcaacatagatttggtgattgatatca 60  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  44306219 aattcttccattactcaacatagatttggtcattgatatca 44306259  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 13893737 - 13893697
Alignment:
Q  20 aattcttccattactcaacatagatttggtgattgatatca 60  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13893737 aattcttccattactcaacatagatttggtgattgatatca 13893697  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 13331578 - 13331531
Alignment:
Q  7 ctaatttcatcataattcttccattactcaacatagatttggtgattg 54  Q
    ||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13331578 ctaattttatctcaattcttccattactcaacatagatttggtgattg 13331531  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 13342493 - 13342446
Alignment:
Q  7 ctaatttcatcataattcttccattactcaacatagatttggtgattg 54  Q
    ||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13342493 ctaattttatctcaattcttccattactcaacatagatttggtgattg 13342446  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 5672049 - 5672002
Alignment:
Q  7 ctaatttcatcataattcttccattactcaacatagatttggtgattg 54  Q
    ||||||| |||  |||||||||||||||||||||||||||||||||||    
T  5672049 ctaattttatctcaattcttccattactcaacatagatttggtgattg 5672002  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 15762020 - 15761973
Alignment:
Q  7 ctaatttcatcataattcttccattactcaacatagatttggtgattg 54  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||||    
T  15762020 ctaatttcatctcaattcttctattactcaacatagatttggtgattg 15761973  T

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