View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_33 (Length: 265)
Name: NF11654_low_33
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 26612343 - 26612588
Alignment:
| Q |
7 |
atatcatacacacaacttgactttggggaatggagtcgttcagttttaacctccaagcagagaaagccaacgcaatcctaaaacatcataagcttcaaag |
106 |
Q |
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| T |
26612343 |
atatcatacacacaacttgactttggggaatggagtcgttcagttttaacctccaagcagagaaagccaacgcaatcctaaaacatcataagcttcaaag |
26612442 |
T |
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| Q |
107 |
ggcaacaactttgttacggctagttgaagtatgtgttgttttggtcctgatttcaagactttctatgaagttaccaattgtggtaagaaactcgagtgag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26612443 |
ggcaacaactttgttacggctagttgaagtatgtgttgttttggtcttgatttcaagactttctatgaagttaccaattgtggtaagaaactcgagcgag |
26612542 |
T |
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| Q |
207 |
tatttaaaggatatttcagtttttatcaatagccactattttgtct |
252 |
Q |
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| T |
26612543 |
tatttaaaggatatttcagtctttatcaatagccactattttgtct |
26612588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 26604826 - 26605069
Alignment:
| Q |
7 |
atatcatacacacaacttgactttggggaatggagtcgttcagttttaacctccaagcagagaaagccaacgcaatcctaaaacatcataagcttcaaag |
106 |
Q |
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||||||||||||| ||||||| || ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |
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| T |
26604826 |
atatcatacacacttcttgactatgaggaatggagtcatttcgttttaacctccaagtcgagaaagccaacgcaatcctaaaacaccgcaagcttcaaag |
26604925 |
T |
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| Q |
107 |
ggcaacaactttgttacggctagttgaagtatgtgttgttttggtcctgatttcaagactttctatgaagttaccaattgtggtaagaaactcgagtgag |
206 |
Q |
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| T |
26604926 |
ggtaacaatcttattacgactcgttgaagtgtgtgttgttttggtcttgatttcaaggctttctttgaagctactagttgtagtaagaaactcaagtgag |
26605025 |
T |
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| Q |
207 |
tatttaaaggatatttcagtttttatcaatagccactattttgt |
250 |
Q |
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| T |
26605026 |
tatttaagggacgtttcggtcattgtcaatagccattattttgt |
26605069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 26597025 - 26597266
Alignment:
| Q |
7 |
atatcatacacacaacttgactttggggaatggagtcgttcagttttaacctccaagcagagaaagccaacgcaatcctaaaacatcataagcttcaaag |
106 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||| ||||||||||| || | ||||||| ||| || | ||||||||||| ||||||||||| |
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| T |
26597025 |
atatcatacacaca--ttgactttgaggaatggagtcgttcggttttaacctctaaactgagaaaggcaatgctaccctaaaacatcggaagcttcaaag |
26597122 |
T |
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| Q |
107 |
ggcaacaactttgttacggctagttgaagtatgtgttgttttggtcctgatttcaagactttctatgaagttaccaattgtggtaagaaactcgagtgag |
206 |
Q |
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|| ||||| |||||||| || |||||||| ||||| |||||||| |||||||||| |||||||||||| ||||| |||| ||||||||||| || ||| |
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| T |
26597123 |
ggtaacaatcttgttacgacttgttgaagtttgtgtcgttttggtgttgatttcaaggctttctatgaagctaccagttgtagtaagaaactcaagcgag |
26597222 |
T |
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| Q |
207 |
tatttaaaggatatttcagtttttatcaatagccactattttgt |
250 |
Q |
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||||||||||| ||| ||| | ||| ||||| || |||||||| |
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| T |
26597223 |
tatttaaaggactttttagtctctataaatagtcattattttgt |
26597266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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