View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_36 (Length: 255)
Name: NF11654_low_36
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 25703527 - 25703742
Alignment:
| Q |
20 |
caagggattcaatatggaatgttaaacatagttgagcagctttgggaagtttctacatacattttggaattgtacaatggcttcaaccaatgattccttg |
119 |
Q |
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| T |
25703527 |
caagggattcaatatggaatgctaaacatagttgagcaactttgggaagtttctacatacattttggaattgtacaatggtttcaaccaatgattccttg |
25703626 |
T |
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| Q |
120 |
gaaagagattcaaccatattttcccacgcttccatgatggtgctatataacttcgtcaacttcacctatttgaaatccttttctttgtcatccacatctt |
219 |
Q |
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| T |
25703627 |
gaaagagattcaaccatattttc--------ccatgctggtgctatataacttcgtcaacttcacctatttgaaatccttttctttgtcatccacctctt |
25703718 |
T |
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| Q |
220 |
tggaatctttatcttttgcattca |
243 |
Q |
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| T |
25703719 |
tggaatctttatcttttgcattca |
25703742 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 24148177 - 24148093
Alignment:
| Q |
132 |
accatattttcccacgcttccatgatggtgctatataacttcgtcaacttcacctatttgaaatccttttctttgtcatccacat |
216 |
Q |
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| T |
24148177 |
accatattttttcacacatccatgatggtgtcctataacttcgtcgacttcacctatttgacatccttctctttgacatccacat |
24148093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 235
Target Start/End: Complemental strand, 9266203 - 9266012
Alignment:
| Q |
44 |
aacatagttgagcagctttgggaagtttctacatacattttggaattgtacaatggcttcaaccaatgattccttggaaagagattcaaccatattttcc |
143 |
Q |
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| T |
9266203 |
aacatagttgaggaactttgagtagttcctacacacctctcggaattgcacaatggattcaacaaatggttccttcgaagaggattcaatcatatttccc |
9266104 |
T |
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| Q |
144 |
cacgcttccatgatggtgctatataacttcgtcaacttcacctatttgaaatccttttctttgtcatccacatctttggaatctttatcttt |
235 |
Q |
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||| ||| ||||||| | || ||||||| | ||||||||| ||| | |||||| |||| |||||||| |||| ||||||||| ||||| |
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| T |
9266103 |
cacactttcatgatgtttttaattaacttcatggacttcacctctttcatatccttctcttcatcatccacgtcttaggaatctttctcttt |
9266012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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