View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_39 (Length: 246)
Name: NF11654_low_39
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_39 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 61 - 246
Target Start/End: Original strand, 4090893 - 4091081
Alignment:
| Q |
61 |
ccattgactcatgcatacctttggagtagggaacttgctaagaagtaagaagtcgtcttccttccactgtcg---taatgtaattaatatatctggctta |
157 |
Q |
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| T |
4090893 |
ccattgactcatgcatacctttggagtagggaacttgctaagaagtaagaagtcgtcttccttccactgtcgtcgtaatgtaattaatatatctggctta |
4090992 |
T |
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| Q |
158 |
tttgcttgacttggaatagtcctccctggcaacttcctcggattttcagttgtatattttagaataacttggttgaaatcttgttcctc |
246 |
Q |
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| T |
4090993 |
tttgcttgacttggaatagtcctccctggcaacttcctcggattttcagttgtatattttagaataacttggttgaaatcttgttcctc |
4091081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 4090838 - 4090874
Alignment:
| Q |
6 |
agatgaaggatgtcactcgttacaaactcggttaagg |
42 |
Q |
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| T |
4090838 |
agatgaaggatgtcactcgttacaaactcagttaagg |
4090874 |
T |
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