View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11654_low_44 (Length: 239)

Name: NF11654_low_44
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11654_low_44
NF11654_low_44
[»] chr3 (8 HSPs)
chr3 (103-221)||(38716429-38716547)
chr3 (21-70)||(7147021-7147070)
chr3 (21-70)||(23601753-23601802)
chr3 (19-70)||(2813611-2813662)
chr3 (19-70)||(6176589-6176640)
chr3 (19-70)||(14904277-14904328)
chr3 (19-70)||(29309386-29309437)
chr3 (21-67)||(25873224-25873270)
[»] chr8 (3 HSPs)
chr8 (19-70)||(16421121-16421172)
chr8 (21-70)||(2872170-2872219)
chr8 (19-70)||(35405683-35405734)
[»] chr1 (4 HSPs)
chr1 (19-70)||(3692605-3692656)
chr1 (19-70)||(14119748-14119799)
chr1 (21-70)||(32353408-32353457)
chr1 (21-69)||(48073543-48073591)
[»] chr4 (4 HSPs)
chr4 (19-70)||(2631376-2631427)
chr4 (19-70)||(8487092-8487143)
chr4 (21-70)||(23873587-23873636)
chr4 (21-70)||(55298600-55298649)
[»] chr5 (3 HSPs)
chr5 (8-70)||(32918285-32918347)
chr5 (19-67)||(6264312-6264360)
chr5 (19-70)||(15499757-15499808)
[»] chr2 (3 HSPs)
chr2 (21-70)||(43627479-43627528)
chr2 (19-70)||(13550102-13550153)
chr2 (8-69)||(33547839-33547900)
[»] chr6 (4 HSPs)
chr6 (19-67)||(8872940-8872988)
chr6 (19-70)||(15673803-15673854)
chr6 (19-58)||(25317832-25317871)
chr6 (19-58)||(26205326-26205365)
[»] chr7 (2 HSPs)
chr7 (19-70)||(45235928-45235979)
chr7 (21-70)||(13440033-13440082)


Alignment Details
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 38716429 - 38716547
Alignment:
Q  103 ttttgaagggatttttaaatatatttgtacaccaatagactataatttcattaaagaaaacaacaaataaattgtaattacagatttgtataagttctat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38716429 ttttgaagggatttttaaatatatttgtacaccaatagactataatttcattaaagaaaacaacaaataaattgtaattacagatttgtataagttctat 38716528  T
Q  203 attgattttgactgcatat 221  Q
    |||||||||||||||||||    
T  38716529 attgattttgactgcatat 38716547  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 7147021 - 7147070
Alignment:
Q  21 gacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  7147021 gacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttgg 7147070  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 23601753 - 23601802
Alignment:
Q  21 gacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  23601753 gacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttgg 23601802  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 2813662 - 2813611
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||| ||||||| ||||||||||| |||||||||| ||||||||||    
T  2813662 aggacatgtcaggcgacagcacccgtctagcaatcaaatttgtccttgttgg 2813611  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 6176640 - 6176589
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||| ||||||||||||||||||| |||||||||  ||||||||||    
T  6176640 aggacatgtcaggcgacaacacccgtctagcaatcaaattagtccttgttgg 6176589  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 14904328 - 14904277
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||| ||| ||| ||||||||||| |||||||||| ||||||||||    
T  14904328 aggacatgtcaggcaacagcacccgtctagcaatcaaatttgtccttgttgg 14904277  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 29309386 - 29309437
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||| ||||||| ||||||||||| |||||| ||| ||||||||||    
T  29309386 aggacatgtcaggcgacagcacccgtctagcaatcaagtttgtccttgttgg 29309437  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 25873270 - 25873224
Alignment:
Q  21 gacatgtccggcgacaacacccgtctaggaatcaaatttatccttgt 67  Q
    ||||||||  |||| ||||||||||||| ||||||||||||||||||    
T  25873270 gacatgtcaagcgataacacccgtctagaaatcaaatttatccttgt 25873224  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 16421172 - 16421121
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  16421172 aggacatgtccggcgacaacacccgtctagcaatcaaatttgtccttgttgg 16421121  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 2872170 - 2872219
Alignment:
Q  21 gacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    ||||| || ||||||||||||||||||| |||||||||| ||||||||||    
T  2872170 gacatatcaggcgacaacacccgtctagcaatcaaatttgtccttgttgg 2872219  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 35405683 - 35405734
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||| ||||||||||||||||| | |||||||||| || |||||||    
T  35405683 aggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttgg 35405734  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 3692605 - 3692656
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  3692605 aggacatgtccggcgacaacacccgtctagcaatcaaatttgtccttgttgg 3692656  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 14119748 - 14119799
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  14119748 aggacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttgg 14119799  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 32353457 - 32353408
Alignment:
Q  21 gacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  32353457 gacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttgg 32353408  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 48073591 - 48073543
Alignment:
Q  21 gacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttg 69  Q
    |||||||| | |||||||||||||| || |||||||||| |||||||||    
T  48073591 gacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttg 48073543  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 2631376 - 2631427
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  2631376 aggacatgtctggcgacaacacccgtctagcaatcaaatttgtccttgttgg 2631427  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 8487143 - 8487092
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  8487143 aggacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttgg 8487092  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 23873636 - 23873587
Alignment:
Q  21 gacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||| | |||||||||||||| || |||||||||| ||||||||||    
T  23873636 gacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttgg 23873587  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 55298600 - 55298649
Alignment:
Q  21 gacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||| | |||||||||||||| || |||||||||| ||||||||||    
T  55298600 gacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttgg 55298649  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 32918285 - 32918347
Alignment:
Q  8 agcagcacagaaggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||| |||| ||||||||||| ||||||||||||||||||| |||||||||| || |||||||    
T  32918285 agcaacacacaaggacatgtcaggcgacaacacccgtctagcaatcaaatttgtctttgttgg 32918347  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 6264360 - 6264312
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgt 67  Q
    |||||||||| ||||||||||||||||||| |||||||||| |||||||    
T  6264360 aggacatgtcaggcgacaacacccgtctagaaatcaaatttgtccttgt 6264312  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 15499808 - 15499757
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||| |||  |||||||||||||| |||||||||| ||||||||||    
T  15499808 aggacatgtcaggcaccaacacccgtctagcaatcaaatttgtccttgttgg 15499757  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 43627479 - 43627528
Alignment:
Q  21 gacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  43627479 gacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttgg 43627528  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 13550102 - 13550153
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    ||||||||||  |||||||||||||||||| |||||||||  ||||||||||    
T  13550102 aggacatgtcatgcgacaacacccgtctagcaatcaaattagtccttgttgg 13550153  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 33547839 - 33547900
Alignment:
Q  8 agcagcacagaaggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttg 69  Q
    |||| |||| || |||||||| | |||||||||||||| || |||||||||| |||||||||    
T  33547839 agcaacacacaaagacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttg 33547900  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 8872988 - 8872940
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgt 67  Q
    |||||||||| ||||||||||||||||||| |||||||||| |||||||    
T  8872988 aggacatgtcaggcgacaacacccgtctagaaatcaaatttgtccttgt 8872940  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 15673803 - 15673854
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||| ||||||||||||| ||||| |||||||||| ||||||||||    
T  15673803 aggacatgtcaggcgacaacacccttctagcaatcaaatttgtccttgttgg 15673854  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 25317832 - 25317871
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatt 58  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  25317832 aggacatgtcaggcgacaacacccgtctagcaatcaaatt 25317871  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 26205326 - 26205365
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatt 58  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  26205326 aggacatgtcaggcgacaacacccgtctagcaatcaaatt 26205365  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 45235928 - 45235979
Alignment:
Q  19 aggacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||||| ||||||| ||||||||| | ||||||||||||| |||||||    
T  45235928 aggacatgtcaggcgacatcacccgtcttgcaatcaaatttatctttgttgg 45235979  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 13440033 - 13440082
Alignment:
Q  21 gacatgtccggcgacaacacccgtctaggaatcaaatttatccttgttgg 70  Q
    |||||||| | |||||||||||||| || |||||||||| ||||||||||    
T  13440033 gacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttgg 13440082  T

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