View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_45 (Length: 239)
Name: NF11654_low_45
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34640388 - 34640608
Alignment:
| Q |
1 |
acatgaaagcataaatatattcttaatcaagattaataaacccatcagtatattatttatttcataagctagttttgttggtgttaaattaaaatttgaa |
100 |
Q |
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| T |
34640388 |
acatgaaagcataaatatattcttaatcaagattaataaacccatcagtatattatttatttcataagctagttttgttggtgttaaattaaaatttgaa |
34640487 |
T |
|
| Q |
101 |
gctgggtcatagtgggtgtttgagaacagtgacatgcatggttttaagttgcatatgcattgccatccttaatattgcaggcaaatgtggctgatgtagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34640488 |
gctgggtcatagtgggtgtttgagaacagtgacatgcatggttttaagatgcatatgcattgccatccttaatattgcaggcaaatgtggctgatgtagc |
34640587 |
T |
|
| Q |
201 |
atcaataacaactaactatta |
221 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
34640588 |
atcaataacaattaactatta |
34640608 |
T |
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