View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_48 (Length: 236)
Name: NF11654_low_48
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_48 |
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| [»] chr6 (10 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 897231 - 897013
Alignment:
| Q |
18 |
cagagcactaccaataacaaatcttaggcctaaaatcaaggactccagcatctcatccaaaaccccatttgtactcaatatgcaataacatatcctaagt |
117 |
Q |
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| T |
897231 |
cagagcactaccaataacaaatcttaggcctaaaatcaaggactccagcatctcatccaaaaccccatttgtactcaatatgcaataacatatcctaagt |
897132 |
T |
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| Q |
118 |
attcaatatgctcactagagagcacttatcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
897131 |
attcaatatgctcactagagagcacttatcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaat |
897032 |
T |
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| Q |
218 |
gcaacaaagaaggcacaat |
236 |
Q |
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||||||||||||||||||| |
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| T |
897031 |
gcaacaaagaaggcacaat |
897013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 1237479 - 1237566
Alignment:
| Q |
144 |
tatcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggc |
231 |
Q |
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| T |
1237479 |
tatcacattttcttaaccacatactcattagagtgcaagtaaaataattcttagaaaccatatacatccacaatgcaataaagaaggc |
1237566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 1193275 - 1193186
Alignment:
| Q |
145 |
atcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcaca |
234 |
Q |
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| T |
1193275 |
atcacattttcttaaccacatactcattagagagcaagtaaaaaaattcttagaaatcatattcatctacgatgcaataaagaaggcaca |
1193186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 1182330 - 1182236
Alignment:
| Q |
143 |
ttatcacattttcttaaccacatactcattag---agagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcaca |
234 |
Q |
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| T |
1182330 |
ttatcacattttcttaaccacatattcattagtagagagcaagtaaaaaaattcttagaaaccatatacatccacaatacaataaagaaggcaca |
1182236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 1182464 - 1182389
Alignment:
| Q |
52 |
atcaaggactccagcatctcatccaaaaccccatttgtactcaatatgcaataac-atatcctaagtattcaatat |
126 |
Q |
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| T |
1182464 |
atcaaggactccattatctgatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatat |
1182389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 896617 - 896558
Alignment:
| Q |
66 |
catctcatccaaaaccccatttgtactcaatatgcaataac-atatcctaagtattcaat |
124 |
Q |
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| T |
896617 |
catctcatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaat |
896558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 793878 - 793956
Alignment:
| Q |
143 |
ttatcacattttcttaaccacatactcattagagagcaagtaaaaaa-tttctaagaaaccatatacatccacaatgca |
220 |
Q |
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| T |
793878 |
ttatcacattttcttaaccacatattcattaaaaagcaagtaaaaaagattcttagaaaccatatacaaccacaatgca |
793956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 1176737 - 1176683
Alignment:
| Q |
180 |
aagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcaca |
234 |
Q |
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| T |
1176737 |
aagtaaaaaaattcttagaaaccatatacaaccacaatgcaataaagaaggcaca |
1176683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 1237220 - 1237254
Alignment:
| Q |
18 |
cagagcactaccaataacaaatcttaggcctaaaa |
52 |
Q |
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| T |
1237220 |
cagagcactaccaataacaaatcttaggcataaaa |
1237254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 1237368 - 1237414
Alignment:
| Q |
82 |
ccatttgtactcaatatgcaataac-atatcctaagtattcaatatg |
127 |
Q |
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| T |
1237368 |
ccatttgaactcaatatgcaataacaatatcctaagtactcaatatg |
1237414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 10203863 - 10203774
Alignment:
| Q |
145 |
atcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcaca |
234 |
Q |
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| T |
10203863 |
atcacatttttttaaccacatactcattagagagcaagtaaacaaattcttagaaatcatattcatctacgatgaaaaaaagaaggcaca |
10203774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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