View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_52 (Length: 207)
Name: NF11654_low_52
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 38539966 - 38539790
Alignment:
| Q |
15 |
aagaaccagtattattcaatgacactattcgttccaatattgcctatggaaaaggtggcaatgcaactgaggcagaaatcattgctgctgctgaattggc |
114 |
Q |
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| T |
38539966 |
aagaaccagtattattcaatgacactattcgttccaatattgcctatggaaaaggtggcaatgcaactgaggcagaaatcattgctgctgctgaattggc |
38539867 |
T |
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| Q |
115 |
caatgcacatagattcattagtggcttacagcaggtaaacatcgattaaataaaaactctaccaaacataaaaaatc |
191 |
Q |
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| T |
38539866 |
caatgcagatagattcattagtggcttacagcaggtaaacattgattaaacaaaaactctaccaaacataaaaaatc |
38539790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 38562184 - 38562008
Alignment:
| Q |
15 |
aagaaccagtattattcaatgacactattcgttccaatattgcctatggaaaaggtggcaatgcaactgaggcagaaatcattgctgctgctgaattggc |
114 |
Q |
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| T |
38562184 |
aagaaccagtattattcaatgacactattcgttccaatattgcctatggaaaaggtggcaatgcaactgaggcagaaatcattgctgctgctgaattggc |
38562085 |
T |
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| Q |
115 |
caatgcacatagattcattagtggcttacagcaggtaaacatcgattaaataaaaactctaccaaacataaaaaatc |
191 |
Q |
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| T |
38562084 |
caatgcagatagattcattagtggcttacagcaggtaaacattgattaaacaaaaactctaccaaacataaaaaatc |
38562008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 38522811 - 38522675
Alignment:
| Q |
15 |
aagaaccagtattattcaatgacactattcgttccaatattgcctatggaaaaggtggcaatgcaactgaggcagaaatcattgctgctgctgaattggc |
114 |
Q |
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| T |
38522811 |
aagaaccagtcttattcaatgacactattcgtgccaatattgcttatggcaaaggtggcattgcaactgaggcagaaatcattgctgctgctgaattggc |
38522712 |
T |
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| Q |
115 |
caatgcacatagattcattagtggcttacagcaggta |
151 |
Q |
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| T |
38522711 |
taatgctcataggttcatcagtggcttacaacaggta |
38522675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 51215394 - 51215495
Alignment:
| Q |
53 |
attgcctatggaaaaggtggcaatgcaactgaggcagaaatcattgctgctgctgaattggccaatgcacatagattcattagtggcttacagcaggtaa |
152 |
Q |
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|||||||||||||||||||| |||||||||||||| ||| | || ||||| || ||| | || ||||| |||| ||||||||| | || |||||||||| |
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| T |
51215394 |
attgcctatggaaaaggtggtaatgcaactgaggctgaagttatagctgcagcagaactagcaaatgctcataacttcattagtagtttgcagcaggtaa |
51215493 |
T |
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| Q |
153 |
ac |
154 |
Q |
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|| |
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| T |
51215494 |
ac |
51215495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 49734629 - 49734575
Alignment:
| Q |
48 |
ccaatattgcctatggaaaaggtggcaatgcaactgaggcagaaatcattgctgc |
102 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |
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| T |
49734629 |
ccaacattgcgtatggaaaaggtggcaatgcaactgaggctgaaattatagctgc |
49734575 |
T |
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