View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_6 (Length: 619)
Name: NF11654_low_6
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 43173230 - 43172743
Alignment:
| Q |
18 |
cttcacactctccattcccgatcagattacgtacgtggtggagcttcaacaaaacaaaaatctctttctgccacgtacgtacgtatatcaagtgttgtta |
117 |
Q |
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| T |
43173230 |
cttcacactctccattcccgatcagattacgtacgtggtggagcttcaacaaaacaaaaatctctttctgccacgtacgta----tatcaagtgttgtta |
43173135 |
T |
|
| Q |
118 |
tttttggtcaaggtagtaaatttctaactagagttggacattttcgtatttttaaaatttatgtcttaaaaaatcaaaatca------gaatccttctct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43173134 |
tttttggtcaaggtagtaaatttctaactagagttggacattttcgtatttttaaaatttatgtcttaaaaaatcaaaatcaaaatcagaatccttctct |
43173035 |
T |
|
| Q |
212 |
tcaa-caaaaaccccccgaaacctaaaacagtgaacaaagcagaaagatgatgaacactaacaccgtcgccggcggcagtggtggtggtggcggagacgt |
310 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43173034 |
tcaagcaaaaaccccccgaaacctaaaacagtgaacaaagcggaaagatgatgaacactaacaccgtcgccggcggcagtggtggtggtggcggagacgg |
43172935 |
T |
|
| Q |
311 |
cagaggaaatgaacgacaacttatacgaacaataaccacaatactaaccaaaaacgaaaacccacagaatcttcaacaattcatcccacacttaacactc |
410 |
Q |
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| T |
43172934 |
cagaggaaaagaacgacaacttatacgtacaataaccacaatactaaccaaaaacgaaaacccacagaatcttcaacaattcatcccacacttaacactc |
43172835 |
T |
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| Q |
411 |
ccaatcataatctcaattctttcatacaaacctcttcactctcaaccagaaaccctactttccttcttcaaatggtttcaatccaacgcaca |
502 |
Q |
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| T |
43172834 |
ccaatcataatctcaattctttcatacaaacctcttcactctcaaccagaaaccctactttccttcttcaaatggtttcaatccaacgcaca |
43172743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 247 - 496
Target Start/End: Complemental strand, 51298208 - 51297956
Alignment:
| Q |
247 |
aaagcagaaagatgatgaacactaacaccgtcgccggcggcagtggtggtggtggcggagacgtcagaggaaatgaacgacaacttatacgaacaataac |
346 |
Q |
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|||||| ||| ||| ||||||| ||||||| || ||||| ||||| |||||| |||||||| | ||||||| |||| |||||| |||| ||||||||| |
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| T |
51298208 |
aaagcataaacatggtgaacacgaacaccg---ccagcggcggtggtagtggtgtcggagacggcggaggaaaagaacaacaactgatacaaacaataac |
51298112 |
T |
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| Q |
347 |
cacaatactaac------caaaaacgaaaacccacagaatcttcaacaattcatcccacacttaacactcccaatcataatctcaattctttcatacaaa |
440 |
Q |
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|||| || |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51298111 |
cacagtattaacaaaaaccaaaaacgaaaacccacagaatcttcaacaattcattccacacttaacactcccaatcataatctcaatcctttcatacaaa |
51298012 |
T |
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| Q |
441 |
cctcttcactctcaaccagaaaccctactttccttcttcaaatggtttcaatccaa |
496 |
Q |
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|||||||||| ||||||| |||||||| ||||||||||||||||||| ||| |||| |
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| T |
51298011 |
cctcttcactgtcaaccaaaaaccctagtttccttcttcaaatggttccaaaccaa |
51297956 |
T |
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