View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11654_low_9 (Length: 490)
Name: NF11654_low_9
Description: NF11654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11654_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Complemental strand, 33377397 - 33376933
Alignment:
| Q |
19 |
aaaaccctaatcctattcttcttttttgaagaacactcaattcctttcaaagacatatgtgatggcaattgattggaacttccactaattataggagtgc |
118 |
Q |
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| T |
33377397 |
aaaaccctaatcctatccttcttttttgaagaacactcaattcctttcaaagacatatgtgatggcaattgattggaacttccactaattataggagtgc |
33377298 |
T |
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| Q |
119 |
aattctttgaagaattgcactcatgagtgtactctagttggagtctacgaatagcactcgagagaggatatttacaaaaactgaatgaatcaaagtttaa |
218 |
Q |
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| T |
33377297 |
aattctttgtagaattgcactcatgagtgtactctagttggagtctacgaatagcactcgaaagaggatatttacaaaaactgaatgaatcaaagtttaa |
33377198 |
T |
|
| Q |
219 |
tgataaaccctcctcatcatcttcgctaccaaaagagaactcgttttcaacttctttagaatccaaactataactataatttgcttttggaaacatcatt |
318 |
Q |
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| T |
33377197 |
tgataaaccctcctcatcatcgtcgctaccaaaagagaactcgttttcaacttctttagaatccaaactataactataatttgcttttggaaacatcatt |
33377098 |
T |
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| Q |
319 |
aaagaaattggttcaaagtaatgaacatcatcatccttttcagaactcaaactctctaagcttccactaaccaaactagttatattgattgaattgaaga |
418 |
Q |
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| T |
33377097 |
aaagaaattggttcaaagtaatgatcatcatcatccttttcagaactcaaactctctaagcttccactaaccaaactagttatattgattgaattgaaga |
33376998 |
T |
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| Q |
419 |
cattgttaagtttaaaaacaacatcaagattgagagaatcaccttttttcgaaacacctttgctt |
483 |
Q |
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| T |
33376997 |
cattgttaagtttaaaaacaacatcaagattgagagaatcaccttttttcgaaacacctttgctt |
33376933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 101 - 462
Target Start/End: Complemental strand, 33383468 - 33383101
Alignment:
| Q |
101 |
cactaattataggagtgcaattctttgaagaattgcactcatgagtgtactctagttggagtctacgaatagcactcgagagaggatatttacaaaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| | |||||| || ||||| ||| || ||||||||| |
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| T |
33383468 |
cactaattataggagtgcaattctttgaagaattgcactcgtgagtgtactctaatcggagtcttctaatagctcttgagagtggaaatgaacaaaaact |
33383369 |
T |
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| Q |
201 |
gaatgaatcaaagtttaatgataaaccctc---ctcatcatcttcgctaccaaaagagaactcgttttcaacttctttagaatccaaactataactataa |
297 |
Q |
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| T |
33383368 |
tgatggatatggatttagtgacaaaccctttttctcagaaacatcactttcaaaagagaattcattttcagcttctttagaatccaaactataactataa |
33383269 |
T |
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| Q |
298 |
tttgcttttggaaacatcattaaagaaattggttcaaagtaatgaac---atcatcatccttttcagaactcaaactctctaagcttccactaaccaaac |
394 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| | ||||| |
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| T |
33383268 |
tttgcttttggaaacatcattatagaaattggttcaaagtaatgatctttctcatcacccttttcagaactcaaactctctaagcttccactgatcaaac |
33383169 |
T |
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| Q |
395 |
tagttatattgattgaattgaagacattgttaagtttaaaaacaacatcaagattgagagaatcacct |
462 |
Q |
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|||| || || |||||| ||| ||||||||||| ||||| ||| |||||||||| |||||||||||| |
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| T |
33383168 |
tagtgatgttacttgaatggaaaacattgttaagcttaaagacagcatcaagattaagagaatcacct |
33383101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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