View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_high_11 (Length: 567)
Name: NF11655_high_11
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 5e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 371 - 550
Target Start/End: Complemental strand, 24291350 - 24291171
Alignment:
| Q |
371 |
ttctataaactgcttttcagactggtgcgcttgttcgcttgcttccattgattggatcttcaagtataaggtattttaaggtatctaggttcgttattgt |
470 |
Q |
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| T |
24291350 |
ttctataaactgattttcagactgatgctcttgttcgcttgcttccattgattggatcttcaagtatcaggtattttaaggtatctaggttccttattgt |
24291251 |
T |
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| Q |
471 |
taattgtggttttgttagaagctatacttcgactaccaaacttgcagatagttgcagaaaaatgttgcttatgtgactga |
550 |
Q |
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| T |
24291250 |
taattgtggctttattagcagctatacttcgactaccaaacttgcagatagttgcagtgaaatgttgcttatgtgactga |
24291171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 52 - 199
Target Start/End: Complemental strand, 24291684 - 24291535
Alignment:
| Q |
52 |
gtgggtgtgaggaggtgtattgagagtttggttagtgatatt--acttcaataatggtttcaagtagtgggtacccttcaccttacaagtcagtttttgt |
149 |
Q |
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| T |
24291684 |
gtgggtgtgaggaggtgtattgagagtttagatagtgatattttacttcaataatggttctaagtagtgggtacccttcaccttacaagtcagtttttgt |
24291585 |
T |
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| Q |
150 |
gaggtcgagttaggctagatattgcatagtgatatagcctttatagttct |
199 |
Q |
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| T |
24291584 |
gaggttgagttaggctagatattgcatagagatacagcctttttagttct |
24291535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 261 - 367
Target Start/End: Complemental strand, 24291534 - 24291428
Alignment:
| Q |
261 |
tataagaacttcaaaatgtatgaaccatgttgccaacctcctattgtgttatgaatcatctatgctaagtagcttcaccacgtgatgagtatgaatcagt |
360 |
Q |
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| T |
24291534 |
tataagaacttcaaaatgtatgaaccatgttgtcaacctcctatcgtgttatgaatcatctatgctaagtagcttcatcacgtgatgagtatgaatcagt |
24291435 |
T |
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| Q |
361 |
tatcctt |
367 |
Q |
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| T |
24291434 |
tatcctt |
24291428 |
T |
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