View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_high_13 (Length: 542)
Name: NF11655_high_13
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 13 - 534
Target Start/End: Original strand, 9471249 - 9471770
Alignment:
| Q |
13 |
aatttcaccaaaggaataaaagattctacctcagcattagatgtttttgtgctagcaatctttgcagcaaacctcctaatataacagtaaagcaagataa |
112 |
Q |
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| T |
9471249 |
aatttcaccaaaggaataaaagattctacctcagcattagatgtttttgtgctagcaatctttgcagcaaacctcctaatataacagtaaagcaagataa |
9471348 |
T |
|
| Q |
113 |
gtccatcatcattttaacaaaacttgcatggtaataagatgaaaaattccattatttcggatctacaacacagacacctgacacgacagagacaccgtgg |
212 |
Q |
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| T |
9471349 |
gtccatcatcattttaacaaaacttgcatggtaataagatgaaaaattccattatttcggatctataacgcagacacctgacacgacagagacaccgtgg |
9471448 |
T |
|
| Q |
213 |
catgtagatgtagacaccgatgacaaattcatttaagaaaataacaataattgaatttaaccacatctgataatgtggcgtcggacttctgtcgaacact |
312 |
Q |
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| T |
9471449 |
catgtagatgtagacaccgatgacaaattcatttaagaaaataacaataattgaatttaaccacatctgataatgtggcgtcggacttctgtcgaacact |
9471548 |
T |
|
| Q |
313 |
aaacattccaataatctgaattgtcaatgctacataatttctgttttggttattaaaattgcaaaattcaaacacttgtctcagtatctttgtgttttct |
412 |
Q |
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| T |
9471549 |
aaacattccaataatctgaattgtcaatgctacataatttctgttttggtttttaaaattgcaaaattcaaacacttgtctcagtatctttgtgttttct |
9471648 |
T |
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| Q |
413 |
tatggtcaaccaatccagaaattcaattcacactaaagggtctatgaaccaaaccagaaacttaaatcatcaattcctcacctagtgatgggtcgatgaa |
512 |
Q |
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| T |
9471649 |
tatggtcaaccaatccagaaattcaaatcacactaaagggtctatgaaccaaaccagaaacttaaatcatcaattcctcacctagtgatgggtcgatgaa |
9471748 |
T |
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| Q |
513 |
ccggatccgcttgtttcttctc |
534 |
Q |
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| T |
9471749 |
ccggatccgcttgtttcttctc |
9471770 |
T |
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