View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_high_14 (Length: 524)
Name: NF11655_high_14
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Complemental strand, 21844524 - 21844026
Alignment:
| Q |
19 |
agattaaaggtgtgacagtaatgtcttgaggtaaggtttgtatcgttcattgtagtcttactcgattcaaacgaaaaggatgtggtagtggttaaatttc |
118 |
Q |
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| T |
21844524 |
agattaaaggtgtgacagtagtgtcttgaggtagggtttgtatcgtccattgtagtcttactcgattcaaacgaaaaggatgtggtagtggttcaatttc |
21844425 |
T |
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| Q |
119 |
aaccactagtattataaccttatctggggcatagaaattttaatttgtattgtagcatttaaatttttcaaattgtttcctaattttagctataactatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21844424 |
aaccactagtattataaccttatctggggcatagaaattttaatttgtattgtagcatttaaatttttcaaattgtttcctatttttagctataactatg |
21844325 |
T |
|
| Q |
219 |
caaatatcacccaatannnnnnnnn-aaggaaaattatcaccaaatatatatttcgttnnnnnnnntatcattcaatatatattgcaaaaaccaccatct |
317 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21844324 |
caaatatcacccaatattttttttttaaggaaaattatcaccaaatatatatttcgttaaaaat--tatcattcaatatatattgcaaaaaccaccatct |
21844227 |
T |
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| Q |
318 |
ttttcctcaaaggaaagaaaaacccaccatctttagtgcaataaaatgtacaatctataatggtttcaaaaataaaatgaacaattgaaata-ttttgta |
416 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||||| ||||||| |
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| T |
21844226 |
tttccctcaaaggaaagaaaaacccaccatctttagtgcaataaaatgtacaatatataatggttccaaatataaaatgcacaattgaaatacttttgta |
21844127 |
T |
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| Q |
417 |
ttcatatcatttaatcaatacaagtaattattcgaattcgacttctatatgaacattcacacacaccccattttgaacctcgtagaatctgaatttgttc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21844126 |
ttcatatcatttaatcaatacaagtaattattcgaattcgacttctatatgaacattcacacacaccccattttgaacctcgtagaatctgaatttgttc |
21844027 |
T |
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