View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11655_high_15 (Length: 520)
Name: NF11655_high_15
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_high_15 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 20 - 520
Target Start/End: Complemental strand, 1330207 - 1329707
Alignment:
| Q |
20 |
gcttcttctccatctctgacatttgaacgtaagacggtggtgcgatagccaatgaagctgcaaatggatctacatatcctgaagtagaattaactccagt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1330207 |
gcttcttctccatctctgacatttgaacgtaagacggcggtgcgatagccaatgaagctgcaaatggatctacatatcctgaagtagaattaactccagt |
1330108 |
T |
|
| Q |
120 |
tcctgatgttggtggtgctggcaatgctagcattgctggccttccggctgaaccaagtgctacactgctagcacttccactgcaaccatatcccactcct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1330107 |
tcctgatgttggtggtgctggcaatgctagcattgctggccttccggctgaaccaagtgctacactgctagcacttccactgccaccatatcccactcct |
1330008 |
T |
|
| Q |
220 |
tgcatggctgcattcatttctccttgtttatacataccatccaacaataatgtatcaaagcctccacctaatgcaggctgctggtttcctaagtggctgg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1330007 |
tgcatggctgcattcatttctccttgtttatacataccatccaacaataatgtatcaaagcctccacctaatgcaggctgctggtttcctaagtggctgg |
1329908 |
T |
|
| Q |
320 |
ttgattgtaccaacgctgtttcccaatctgcactctcgtcaaatgcatgccatggaagtgcttttattccaccttcacttgttgctggtgcagccccatc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1329907 |
ttgattgtaccaacgctgtttcccaatctgcactctcatcaaatgcatgccatggaagtgcttttattccaccttcacttgttgctggtgcagccccatc |
1329808 |
T |
|
| Q |
420 |
aaataaagctaaggcaagtttgtccccatgttcttcagttgtcactctatcatctcctaagttcaacaaatcaccctcggtttgcacaattttttcttct |
519 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1329807 |
aaataaagctaaggctagtttgtccccatgttcttcagttgtcactctatcatctcctaagttcaacaaatcaccctcggtttgcacaattttttcttct |
1329708 |
T |
|
| Q |
520 |
t |
520 |
Q |
| |
|
| |
|
|
| T |
1329707 |
t |
1329707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 1925753 - 1925689
Alignment:
| Q |
26 |
tctccatctctgacatttgaacgtaagacggtggtgcgatagccaatgaagctgcaaatggatct |
90 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| | | || ||| ||||||||||||||| |
|
|
| T |
1925753 |
tctccatctctgacatttgaacataagctggtggtgctacaagcattgatgctgcaaatggatct |
1925689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University