View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11655_high_17 (Length: 454)

Name: NF11655_high_17
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11655_high_17
NF11655_high_17
[»] chr8 (5 HSPs)
chr8 (58-325)||(20656929-20657196)
chr8 (365-441)||(1359103-1359180)
chr8 (341-437)||(24736153-24736252)
chr8 (137-197)||(29527118-29527178)
chr8 (171-207)||(31285102-31285138)
[»] scaffold0045 (2 HSPs)
scaffold0045 (342-441)||(65084-65183)
scaffold0045 (342-441)||(72416-72515)
[»] chr7 (1 HSPs)
chr7 (356-405)||(29051360-29051409)
[»] chr2 (1 HSPs)
chr2 (365-421)||(37595264-37595320)
[»] chr4 (2 HSPs)
chr4 (214-296)||(17766660-17766742)
chr4 (353-390)||(55397908-55397945)
[»] chr1 (1 HSPs)
chr1 (365-423)||(32979645-32979703)
[»] chr3 (1 HSPs)
chr3 (341-390)||(31805477-31805526)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 58 - 325
Target Start/End: Original strand, 20656929 - 20657196
Alignment:
Q  58 gggtggttatgatgttaatattttactgttggcctttcatgtgaaggggttaacagagaccttgtgtcatcttgtaagattagtatgaatggtcaaagtt 157  Q
    |||||||||  |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20656929 gggtggttacaatgtcaatattttactgttggccttgcatgtgaaggggttaacagagaccttgtgtcatcttgtaagattagtatgaatggtcaaagtt 20657028  T
Q  158 ggttgtccaaaatcaacttgtatgtcagaccgatttgaatttaggattgttgagagtagtttccaccttctcctgctctgtcatcttgtgtttccaaatt 257  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20657029 ggttgtccaatatcaacttgtatgtcagaccgatttgaatttaggattgttgagagtagtttccaccttctcctgccctgtcatcttgtgtttccaaatt 20657128  T
Q  258 tttcaaagggcacacgagagaaatgacaaaccttctcctccttcttcctccaactttttgtattaaag 325  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20657129 attcgaagggcacacgagagaaatgacaaaccttctcctccttcttcctccatctttttgtattaaag 20657196  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 441
Target Start/End: Original strand, 1359103 - 1359180
Alignment:
Q  365 ttatgttaatgtaaatgtattatgaattcctgttcaattaacgaaatgtgttgaatta-taaatttcgttgtcaattt 441  Q
    ||||||||||||||||||||||||||||| || ||||||||  |  |||||| ||||| | |||||||||||||||||    
T  1359103 ttatgttaatgtaaatgtattatgaattcttgatcaattaataagttgtgttaaattattgaatttcgttgtcaattt 1359180  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 437
Target Start/End: Original strand, 24736153 - 24736252
Alignment:
Q  341 tcaaacatattgtactaattaactttatgttaatgtaaatgtattatgaattcctgttc--aattaacgaaatgtgttgaatta-taaatttcgttgtca 437  Q
    ||||||||||||| |||||||   || |||||| ||||||| ||||||||||| |||||  ||||||  ||||||||||||||| ||||||| |||||||    
T  24736153 tcaaacatattgttctaattagtgttctgttaaagtaaatgaattatgaattcatgttcaaaattaataaaatgtgttgaattattaaatttggttgtca 24736252  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 29527178 - 29527118
Alignment:
Q  137 ttagtatgaatggtcaaagttggttgtccaaaatcaacttgtatgtcagaccgatttgaat 197  Q
    ||||||||||||||||||||  |||||| |  |||||||||||||||| | | ||||||||    
T  29527178 ttagtatgaatggtcaaagtgagttgtctagcatcaacttgtatgtcatatctatttgaat 29527118  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 31285102 - 31285138
Alignment:
Q  171 caacttgtatgtcagaccgatttgaatttaggattgt 207  Q
    |||||||||| |||||||| |||||||||||||||||    
T  31285102 caacttgtatttcagaccggtttgaatttaggattgt 31285138  T

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Target: scaffold0045 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 441
Target Start/End: Original strand, 65084 - 65183
Alignment:
Q  342 caaacatattgtactaattaactttatgttaatgtaaatgtattatgaattcctgttcaattaacgaaatgtgttgaatta-taaatttcgttgtcaatt 440  Q
    ||||||| ||||||||| |  | |||||||| ||||||||||||||| | || |||||||||||  || |||||||||||| ||||||| ||||||||||    
T  65084 caaacattttgtactaaatcccgttatgttattgtaaatgtattatgta-tcttgttcaattaataaattgtgttgaattattaaattttgttgtcaatt 65182  T

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Target: scaffold0045; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 441
Target Start/End: Original strand, 72416 - 72515
Alignment:
Q  342 caaacatattgtactaattaactttatgttaatgtaaatgtattatgaattcctgttcaattaacgaaatgtgttgaatta-taaatttcgttgtcaatt 440  Q
    ||||||| ||||||||| |  | |||||||| ||||||||||||||| | || |||||||||||  || |||||||||||| ||||||| ||||||||||    
T  72416 caaacattttgtactaaatcccgttatgttattgtaaatgtattatgta-tcttgttcaattaataaattgtgttgaattattaaattttgttgtcaatt 72514  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 29051360 - 29051409
Alignment:
Q  356 taattaactttatgttaatgtaaatgtattatgaattcctgttcaattaa 405  Q
    |||||||| |||| ||||||||||||||||||||| || |||||||||||    
T  29051360 taattaacattatattaatgtaaatgtattatgaaatcatgttcaattaa 29051409  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 37595320 - 37595264
Alignment:
Q  365 ttatgttaatgtaaatgtattatgaattcctgttcaattaacgaaatgtgttgaatt 421  Q
    ||||||||||||||||||||||||||||| || |||| |||  ||||||||| ||||    
T  37595320 ttatgttaatgtaaatgtattatgaattcttgatcaaataataaaatgtgtttaatt 37595264  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 296
Target Start/End: Original strand, 17766660 - 17766742
Alignment:
Q  214 tagtttccaccttctcctgctctgtcatcttgtgtttccaaatttttcaaagggcacacgagagaaatgacaaaccttctcct 296  Q
    |||||||||||||||||| |||  |||||||||||| ||||||| |||  ||||  |  |||||  |||||||||||||||||    
T  17766660 tagtttccaccttctcctactccatcatcttgtgttcccaaattcttcgcagggtgcgtgagagggatgacaaaccttctcct 17766742  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 55397945 - 55397908
Alignment:
Q  353 tactaattaactttatgttaatgtaaatgtattatgaa 390  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  55397945 tactaattaactttatgttaatgtaattgtattgtgaa 55397908  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 32979703 - 32979645
Alignment:
Q  365 ttatgttaatgtaaatgtattatgaattcctgttcaattaacgaaatgtgttgaattat 423  Q
    ||||||||||| |||||||||||||| || ||||||| |||  ||||||| ||||||||    
T  32979703 ttatgttaatgcaaatgtattatgaaatcatgttcaaataataaaatgtgatgaattat 32979645  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 31805526 - 31805477
Alignment:
Q  341 tcaaacatattgtactaattaactttatgttaatgtaaatgtattatgaa 390  Q
    ||||| || |||||||||||| | ||||||||||||| ||||||||||||    
T  31805526 tcaaatattttgtactaattagcgttatgttaatgtatatgtattatgaa 31805477  T

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