View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11655_high_18 (Length: 450)
Name: NF11655_high_18
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Original strand, 29659451 - 29659877
Alignment:
| Q |
17 |
cttatatgttataagtatttatgctagtagataaattcaacgcttttaatggataaaatttatagcagcaaatcggttagagcaatgtgtcttgtt-gta |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
29659451 |
cttataagttataagtatttatgctagtagataaattcaacgcttttaatggataaaatttatagcagcaaatcggttag-gcaatgtgtcttgtttgta |
29659549 |
T |
|
| Q |
116 |
cttgcagaatttacaaataacaatggtacataattcaa-gtgttggttttgtaagcttc---tattgaagtaagtaactgatgtgtagtccccaccttcc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29659550 |
cttgcagaatttacaaataacaatggtacacaattcaaagtgttggttttgtaagcttcttctattgaagtaagtaactgatgtgtagtccccaccttcc |
29659649 |
T |
|
| Q |
212 |
taattttttattgtcttgtttctgaggtaggaatggaatgatgacataattgctttaaactaaatattcctgctatctttggtttcactcaagttagatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29659650 |
taattttttattgtcttgtttctgaggtaggaatggaatgatgacataattgctttaaactaaatattcctgctatctttggtttcactcaagttagatg |
29659749 |
T |
|
| Q |
312 |
ccttttgtccacttctccattacatggaaatcataaagtatgatcttcaaagtcacaaggaggctctgcctctgaagtgcaaagtgcttctgctactttt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29659750 |
ccttttgtccacttctccattacatggaaatcataaagtatgatctacaaagtcacaaggaggctctgcctctgaaatgcaaagtgcttctgctactttt |
29659849 |
T |
|
| Q |
412 |
ttacttcttaaatatatatatgcttctt |
439 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
29659850 |
ttacttcttaaatatatatatgcttctt |
29659877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University