View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11655_high_19 (Length: 430)
Name: NF11655_high_19
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 41605757 - 41605566
Alignment:
| Q |
9 |
agcaaagggttttgtaagagatttgttgacaattttaaattgttgttgcggttgtannnnnnnataatattgtagagaattataataaatttgtttcatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41605757 |
agcaaagggttttgtaagagatttgttgacaattttaaattgttgttgcggttgtatttttttataatattgtagagaattataataaatttgtttcatt |
41605658 |
T |
|
| Q |
109 |
ttaaatagctaaatttatttaaacaactcaaatatgcacaaagctataataaatgtggttgatataatatcgatgattgcagtagtgttctg |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41605657 |
ttaaatagctaaatttacttaaacaactcaaatatgcacaaagctataataaatgtggttgatataatatcgatgattgcagtagtgttctg |
41605566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 281 - 414
Target Start/End: Complemental strand, 41605484 - 41605351
Alignment:
| Q |
281 |
gctacaaattttgttgatgtatatgtgtataacatataatataatagctttgtgatctacttgtttaggataatggctgaggaatttgggtaccaaagaa |
380 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41605484 |
gctacaaattttgtggatgtatatgtgtataacatataatataatagctttgtgatctacttgtttaggataatggctgaggaatttgggtaccaaagaa |
41605385 |
T |
|
| Q |
381 |
gtggaaagaaatgcaaagaaaagtttgagaattt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41605384 |
gtggaaagaaatgcaaagaaaagtttgagaattt |
41605351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 44554625 - 44554579
Alignment:
| Q |
366 |
ttgggtaccaaagaagtggaaagaaatgcaaagaaaagtttgagaat |
412 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||| |||||||||||| |
|
|
| T |
44554625 |
ttgggtaccacagaagttcaaagaaatgcaaagagaagtttgagaat |
44554579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University