View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_high_20 (Length: 430)
Name: NF11655_high_20
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 24 - 413
Target Start/End: Complemental strand, 8673652 - 8673264
Alignment:
| Q |
24 |
aaactaacattaaactatatttagataatatggttcataattatttcaaatttcacatgcctaaattcgaaaattactagcaaatcaatctggatattgg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8673652 |
aaactaacattaaactatatttagataatatggttcataattatttcaaatttcacatgcctaaattcgaaaattactagtaaatcaatctggatattg- |
8673554 |
T |
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| Q |
124 |
cttttacgattacgatactcttcatctaattatccaaacggttcttgaacacctctttcttattttgttggctcggataaagtaaaattttggcctttga |
223 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8673553 |
cttttacgattacggtactcttcatctaattatccaaacggttcttgaacacctctttcttattttgttggctccgataaagtaaaattttggcctttga |
8673454 |
T |
|
| Q |
224 |
aactgcaaaattgatctttaattcatcttgtttgtgaagctaagaaccactaccctccaaagccttgtttaacttgtaaacaaaataatccagagcattc |
323 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8673453 |
aactgcaaaattgatctttaattcatcttgtttgggaagctaagaaccaataccctccaaagccttgtttaacttgtaaacaaaataatccagagcattc |
8673354 |
T |
|
| Q |
324 |
actgctttaacttttttctagtacttttcatcttcatccttgtatttctcagattcttcaatcatgctcatgattttctcagtagagtct |
413 |
Q |
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| T |
8673353 |
actgctttaacttttttctagtacttttcatcttcatccttgtatttctcagattcttcaatcatgctcatgattttctcagtagagtct |
8673264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 153 - 396
Target Start/End: Original strand, 8664566 - 8664809
Alignment:
| Q |
153 |
ttatccaaacggttcttgaacacctctttcttattttgttggctcggataaagtaaaattttggcctttgaaactgcaaaattgatctttaattcatctt |
252 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8664566 |
ttatccaaacagtccttgaacacctctttcttattttgttggctagaataaagtagaattttggcatttgaaactgcaaaattgatctttaattcatctt |
8664665 |
T |
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| Q |
253 |
gtttgtgaagctaagaaccactaccctccaaagccttgtttaacttgtaaacaaaataatccagagcattcactgctttaacttttttctagtacttttc |
352 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8664666 |
gtttgtgaagctaagaaccaataccctccaaagccttgtttaacttgtaaacaaaataatccagagcattcactgctttaacttttttctagtacttttc |
8664765 |
T |
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| Q |
353 |
atcttcatccttgtatttctcagattcttcaatcatgctcatga |
396 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
8664766 |
gtcttcagccttgtatttctcagattcttcaatcatgcttatga |
8664809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 281 - 373
Target Start/End: Complemental strand, 8637370 - 8637278
Alignment:
| Q |
281 |
caaagccttgtttaacttgtaaacaaaataatccagagcattcactgctttaacttttttctagtacttttcatcttcatccttgtatttctc |
373 |
Q |
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|||||||||||||| |||||||||| ||| ||||| |||||||||||| |||||||| |||| ||||| ||||||||| ||||||| ||||| |
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| T |
8637370 |
caaagccttgtttatcttgtaaacataatcatccaaagcattcactgcattaactttcttctggtactcttcatcttcggccttgtacttctc |
8637278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 8664466 - 8664522
Alignment:
| Q |
24 |
aaactaacattaaactatatttagataatatggttcataattatttcaaatttcaca |
80 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
8664466 |
aaacaaacattaaactatatttagatagtatggttcataattatttcaaaattcaca |
8664522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 8637626 - 8637571
Alignment:
| Q |
24 |
aaactaacattaaactatatttagataatatggttcataattatttcaaatttcaca |
80 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||| || ||||||||||| |
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| T |
8637626 |
aaactaacattaaactatatt-agataatatgtttcataatttttgcaaatttcaca |
8637571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 9337874 - 9337785
Alignment:
| Q |
40 |
atatttagataatatggttcataattatttcaaatttcacatgcctaaattcgaaaattactagcaaatcaatctggatattggctttta |
129 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
9337874 |
atatttagataatatgattcataattatttcaaatttcacactcataaattcgaaaattaccagtaaatcaatctggatattggctttta |
9337785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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