View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11655_high_41 (Length: 324)

Name: NF11655_high_41
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11655_high_41
NF11655_high_41
[»] chr3 (1 HSPs)
chr3 (19-314)||(29054865-29055160)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 29054865 - 29055160
Alignment:
Q  19 acaatgcaaacgaagtggtacttaccagccatcccttccagtctgccctttggatggaagtggcaagaagtcatcgacaaccaatctaggatattgactc 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29054865 acaatgcaaatgaagtggtacttaccagccatcccttccagtctgccctttggatggaagtggcaagaagtcatcgacaaccaatctaggatattgactc 29054964  T
Q  119 tgcataaaatttgttcgtggaagaaaaattcaaacacggagttaaagcagaattcccagaaaattcatgatatagtagtccaacaaagtagaggtacaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29054965 tgcataaaatttgttcgtggaagaaaaattcaaacacggagttaaagcagaattcccagaaaattcatgatatagtagtccaacaaagtagaggtacaaa 29055064  T
Q  219 cctggttaaaggtatgaatctgaacatttgagtttgtatatttttcaacaatctataaacagtaaattgttagattacagaaaaattcagcctatg 314  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29055065 cctggttaaaggtatgaatctgaacattcgagtttgtatatttttcaacaatctataaacagtaaattgttagattacagaaaaattcagcctatg 29055160  T

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