View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_high_6 (Length: 663)
Name: NF11655_high_6
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 194 - 473
Target Start/End: Complemental strand, 927297 - 927018
Alignment:
| Q |
194 |
tattatattatgagtaatctctataaggtgctgcttatgcttaggtctataaggtgcatcctaggaagatcaaagctatataaaattgtggtagattagt |
293 |
Q |
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| T |
927297 |
tattatattatgagtaatctctataaggtgctgcttatgcttaggtctataaggtgcatcctaggaagatcaaaggtatataaaattgtggtagattagt |
927198 |
T |
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| Q |
294 |
gaagatgtaaatgatatacataaaaatggtgttgaaattatcaaattattagacactagtagcttagctatagattagagaccaccgtaattgatgcagt |
393 |
Q |
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| T |
927197 |
gaagatgtaaatgatatacataaaaatggtgttgaaattatcaaattattagacactagtagcttagctatagattagagaccaccgtaattgatgcagt |
927098 |
T |
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| Q |
394 |
gatgcctatccatcctgtttctgctctttagaaacccatcccacaagccatctcttgaatcacaaaacaactaaaatcac |
473 |
Q |
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| T |
927097 |
gatgcctatccatcctgtttctgctctttagaaacccatcccacaagccatctcttgaatcacaaaacaactaaaatcac |
927018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 478 - 646
Target Start/End: Complemental strand, 926560 - 926392
Alignment:
| Q |
478 |
atggatgtgagcttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcaaccttgaaatccattacttcact |
577 |
Q |
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| T |
926560 |
atggatgtgagcttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcagccttgaaatccattacttcact |
926461 |
T |
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| Q |
578 |
ttcttgcttgatcccaacttcgacctttcttccgtgcaacttccnnnnnnncatctccatgactttatt |
646 |
Q |
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| T |
926460 |
ttcttgcttgatcccaacttcgacctttcttccgtgcaacttcctttttttcatctccatgactttatt |
926392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 928013 - 927849
Alignment:
| Q |
26 |
tccaactttaataagtttcatttttcaatcataattttcttttaatattgaaatctatctttagaatcaattctgatgtattacannnnnnnnnnnnnng |
125 |
Q |
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| T |
928013 |
tccaactttaatacgtttcatttttcaatcataattttcttttaatattgaaatctatctttagaatcaattctgatgtattaca-tttttctttttttg |
927915 |
T |
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| Q |
126 |
tgatatttgaggtttgccttgttaagaaaggaaagtaacaggcaagcgaagttaaaacagtcttag |
191 |
Q |
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| T |
927914 |
tgatatttgaggtttgccttgttaagaaaggaaagtaataggcaagcgaagttaaaacagttttag |
927849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 490 - 572
Target Start/End: Complemental strand, 924555 - 924473
Alignment:
| Q |
490 |
ttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcaaccttgaaatccattact |
572 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||| || |||||||||||| ||||| ||||||||||| ||||| |
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| T |
924555 |
ttcataggcttggatccattttaatgcatattcaagtcaaccatggcaggcagagacataaagcagccttgaaatcccttact |
924473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 928110 - 928079
Alignment:
| Q |
1 |
atgtttagtgttctttctaatgatctccaact |
32 |
Q |
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| T |
928110 |
atgtttagtgttctttctaatgatctccaact |
928079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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