View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11655_high_60 (Length: 248)

Name: NF11655_high_60
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11655_high_60
NF11655_high_60
[»] scaffold1064 (1 HSPs)
scaffold1064 (1-163)||(2416-2578)
[»] chr4 (5 HSPs)
chr4 (1-136)||(9238488-9238624)
chr4 (2-163)||(5706756-5706917)
chr4 (134-211)||(9238771-9238848)
chr4 (5-163)||(9880874-9881033)
chr4 (2-195)||(26904888-26905076)
[»] chr8 (1 HSPs)
chr8 (2-162)||(37787009-37787169)
[»] chr7 (2 HSPs)
chr7 (14-164)||(296659-296809)
chr7 (14-176)||(30380226-30380388)
[»] chr2 (3 HSPs)
chr2 (2-180)||(38099545-38099723)
chr2 (14-162)||(301926-302074)
chr2 (21-180)||(3461355-3461514)
[»] chr5 (1 HSPs)
chr5 (5-156)||(14233709-14233860)
[»] chr3 (2 HSPs)
chr3 (2-163)||(18641356-18641517)
chr3 (50-163)||(34982935-34983048)
[»] chr6 (2 HSPs)
chr6 (86-180)||(29011197-29011291)
chr6 (2-162)||(28248748-28248908)
[»] scaffold0038 (1 HSPs)
scaffold0038 (2-162)||(48910-49070)
[»] chr1 (2 HSPs)
chr1 (14-88)||(50778524-50778598)
chr1 (128-184)||(44536443-44536499)


Alignment Details
Target: scaffold1064 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 2416 - 2578
Alignment:
Q  1 atgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2416 atgtttgcttctaccatgagagatgggattcttgacaaggcttatggctgacttgttgtcaattctcaatgttagaggcttcatcacttcacacttaagc 2515  T
Q  101 tctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516 tctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 2578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 9238488 - 9238624
Alignment:
Q  1 atgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgtt-agaggcttcatcacttcacacttaag 99  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  9238488 atgtttgcttctaccatgagagatgggattcttgacaagacttatggctgacttgttgtcaattctcagtgttaagaggcttcatcacttcacacttaat 9238587  T
Q  100 ctctttcattgctgaatccaaccacaaagcttgacat 136  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9238588 ctctttcattgatgaatccaaccacaaagcttgacat 9238624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 5706917 - 5706756
Alignment:
Q  2 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 101  Q
    ||||| ||||| ||||||||||  ||| |||| ||||| ||||||| ||| |||||||||||  ||||||| |||||||| |||||||||||||| ||||    
T  5706917 tgtttacttctgccatgagagacaggactcttagcaagacttatggatgatttgttgtcaatcttcagtgtcagaggctttatcacttcacacttgagct 5706818  T
Q  102 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 163  Q
    |||||||  ||||||||| ||| || |||||||| ||||||||||| |||| ||||||||||    
T  5706817 ctttcatcactgaatccagccataatgcttgacaagtagcaaatgttcctgtaatgtactca 5706756  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 9238771 - 9238848
Alignment:
Q  134 catgtagcaaatgtacctgcaatgtactcagatttacatgatgagagcgcaataacaggttggctttttgtaagtttg 211  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9238771 catgtagcaaatgtacctgcaatgtactcagattcacatgatgagagcgcaataacaggttggctttttgtaagtttg 9238848  T

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Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 9881033 - 9880874
Alignment:
Q  5 ttgcttctaccatgagagatgggattcttggcaaggcttatggctgactt-gttgtcaattctcagtgttagaggcttcatcacttcacacttaagctct 103  Q
    |||||||||||||| |||||||||||||| ||||| |||||||  || || |||||||||| | || |||||||||||||  | |||||| |||||||||    
T  9881033 ttgcttctaccatgtgagatgggattcttagcaagacttatggtagattttgttgtcaattatgagggttagaggcttcacaatttcacatttaagctct 9880934  T
Q  104 ttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 163  Q
    |||||  ||||||| |||||||||| |||||| |||| |||||| ||| |||| ||||||    
T  9880933 ttcatcactgaatctaaccacaaagtttgacaagtagaaaatgttcctacaatatactca 9880874  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 26905076 - 26904888
Alignment:
Q  2 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 101  Q
    ||||||||| |||||||||| || || ||||| ||||| ||||||||||| |||||||||||  ||||||||||||| ||||    ||| ||||| | ||    
T  26905076 tgtttgcttataccatgagaaatagggttcttagcaagacttatggctgatttgttgtcaatcttcagtgttagaggtttca----ttcgcacttgatct 26904981  T
Q  102 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatgagagcgcaataacaggttg 195  Q
    |||||||  ||||||||||||| |  |||||||||||| ||||| ||| |||||| ||||||  || ||| ||||| || ||| ||||||||||    
T  26904980 ctttcatcactgaatccaacca-atggcttgacatgtatcaaatatacttgcaatttactcaacttcacaggatgaaagtgcactaacaggttg 26904888  T

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Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 37787009 - 37787169
Alignment:
Q  2 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 101  Q
    ||||| ||||| ||||| ||||| |||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |    
T  37787009 tgtttacttctgccatgtgagattggattctttgcaagacttatggctgatttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagtt 37787108  T
Q  102 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactc 162  Q
    | |||||  |||||| || ||| || |||||||| ||||||||||| ||||||||||||||    
T  37787109 ccttcatcactgaattcagccataatgcttgacaagtagcaaatgttcctgcaatgtactc 37787169  T

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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 296809 - 296659
Alignment:
Q  14 ccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctg 113  Q
    |||||||||| ||||||||| ||||| ||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||| |||||||| ||  |||    
T  296809 ccatgagagacgggattcttagcaagacttatggctgatttgttgtcaatcttcagtgtcagaggcttcatcacttcacacttgagctcttttatcactg 296710  T
Q  114 aatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcag 164  Q
    |||||| ||| |  |||||| | ||||||||||| ||||||||||||||||    
T  296709 aatccagccatagtgcttgaaaagtagcaaatgttcctgcaatgtactcag 296659  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 30380388 - 30380226
Alignment:
Q  14 ccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctg 113  Q
    ||||| ||||| |||||||  ||||| ||||||||||| |||||||||||   |||||||||||| ||||||||||||||||| |||||||||||  |||    
T  30380388 ccatgtgagattggattctaagcaagacttatggctgatttgttgtcaatctccagtgttagaggtttcatcacttcacacttgagctctttcatcactg 30380289  T
Q  114 aatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatg 176  Q
    ||||||| || | ||||||||| |||||||| || ||| ||||||| |||  || ||||||||    
T  30380288 aatccaatcatagagcttgacaagtagcaaaagttccttcaatgtattcaacttcacatgatg 30380226  T

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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 38099545 - 38099723
Alignment:
Q  2 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 101  Q
    |||||| ||||||||||||| || |||||| | ||||| ||||||| ||| |||||||||||  ||||||||||||| ||||||||||||||||| ||||    
T  38099545 tgtttgattctaccatgagaaataggattcctagcaagacttatggttgatttgttgtcaatcttcagtgttagaggtttcatcacttcacacttgagct 38099644  T
Q  102 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatgagag 180  Q
    |||||||   |||||||| | ||| |||||||||| | ||||||| ||||||||||||||||  || |||| |||||||    
T  38099645 ctttcatcattgaatccagcaacagagcttgacatattgcaaatgcacctgcaatgtactcaacttcacataatgagag 38099723  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 302074 - 301926
Alignment:
Q  14 ccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctg 113  Q
    ||||| |||||  ||||||| ||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| || |||||  |||    
T  302074 ccatgtgagattagattctttgcaagacttgtggctgatttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagttccttcatcactg 301975  T
Q  114 aatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactc 162  Q
    ||| || ||| || |||||||| ||||||||||| ||||||||||||||    
T  301974 aattcagccataatgcttgacaagtagcaaatgttcctgcaatgtactc 301926  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 3461514 - 3461355
Alignment:
Q  21 agatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaa 120  Q
    |||| ||||||||  |||| ||||||||||| || || |||||| |||||||||||||||||||||||||||||||||  || |||||  ||||||||||    
T  3461514 agattggattctttacaagacttatggctgatttattatcaattttcagtgttagaggcttcatcacttcacacttaaattccttcatcactgaatccaa 3461415  T
Q  121 ccacaaagcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatgagag 180  Q
    ||| |  |||||||| |||||||| ||||| |  ||||||||   || ||||||||||||    
T  3461414 ccatagtgcttgacaagtagcaaaagtaccagttatgtactcttcttcacatgatgagag 3461355  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 14233860 - 14233709
Alignment:
Q  5 ttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctt 104  Q
    |||||||||||||| ||||| |||||||| |||||||||||||  || |||||||||||||| || |||||||||||||  |||||||| |||||||| |    
T  14233860 ttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcactacttcacatttaagctcct 14233761  T
Q  105 tcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaat 156  Q
    ||||  ||||||| ||||||| ||||||||| ||||||||||| | ||||||    
T  14233760 tcatcactgaatctaaccacatagcttgacaagtagcaaatgttcttgcaat 14233709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 18641356 - 18641517
Alignment:
Q  2 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 101  Q
    ||||| ||||| ||||||||||  ||| |||| ||||| ||||||| ||| |||||||||||  ||||||| |||||||| |||||||||||||| ||||    
T  18641356 tgtttacttctgccatgagagacaggactcttagcaagacttatggatgatttgttgtcaatcttcagtgtcagaggctttatcacttcacacttgagct 18641455  T
Q  102 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 163  Q
    |||||||  ||||||||| ||| || |||||||| ||||||||||| |||| ||||||||||    
T  18641456 ctttcatcactgaatccagccataatgcttgacaagtagcaaatgttcctgtaatgtactca 18641517  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 34983048 - 34982935
Alignment:
Q  50 gacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtac 149  Q
    ||||| ||||||||  || ||||||||||||||| |||||||||||| ||||||||||| ||| | |||||||| ||| ||||||| ||||||||||| |    
T  34983048 gacttattgtcaatcatctgtgttagaggcttcaccacttcacacttgagctctttcatcgctaattccaaccataaaacttgacaagtagcaaatgttc 34982949  T
Q  150 ctgcaatgtactca 163  Q
     |||||| ||||||    
T  34982948 atgcaatatactca 34982935  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 29011197 - 29011291
Alignment:
Q  86 acttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatgagag 180  Q
    ||||||||||| || || |||||  ||||||||||||||||||||||||||||||||||| | |||||||| ||||||| || ||| ||||||||    
T  29011197 acttcacacttgagttcattcatcactgaatccaaccacaaagcttgacatgtagcaaatattcctgcaatatactcagcttcacaagatgagag 29011291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 28248908 - 28248748
Alignment:
Q  2 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 101  Q
    ||||| ||||| ||||||||||    |||||| ||||| |||||| |||| |||||||||||  ||||||| |||||||| | |||||||||||| ||||    
T  28248908 tgtttacttctgccatgagagacaatattcttagcaagacttatgcctgatttgttgtcaatcttcagtgtcagaggctttaccacttcacacttgagct 28248809  T
Q  102 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactc 162  Q
    |||||||  || |||||| ||| || | ||| || |||||||| || || || ||||||||    
T  28248808 ctttcatcactaaatccagccataatgtttggcaagtagcaaaagttccagctatgtactc 28248748  T

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Target: scaffold0038 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 49070 - 48910
Alignment:
Q  2 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 101  Q
    ||||| ||||| ||||||||||    |||||| ||||| |||||| |||| |||||||||||  ||||||| |||||||| | |||||||||||| ||||    
T  49070 tgtttacttctgccatgagagacaatattcttagcaagacttatgcctgatttgttgtcaatcttcagtgtcagaggctttaccacttcacacttgagct 48971  T
Q  102 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactc 162  Q
    |||||||  || |||||| ||| || | ||| || |||||||| || || || ||||||||    
T  48970 ctttcatcactaaatccagccataatgtttggcaagtagcaaaagttccagctatgtactc 48910  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 50778524 - 50778598
Alignment:
Q  14 ccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcact 88  Q
    ||||| ||||| |||||||| ||||| ||||||||||| || || |||||| |||||||||||||||||||||||    
T  50778524 ccatgtgagattggattctttgcaagacttatggctgatttattatcaattttcagtgttagaggcttcatcact 50778598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 44536443 - 44536499
Alignment:
Q  128 gcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatgagagcgca 184  Q
    |||||||| |||||||||||  ||||||||||||| | |||||  ||||||||||||    
T  44536443 gcttgacaagtagcaaatgtttctgcaatgtactctggtttactggatgagagcgca 44536499  T

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