View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_high_71 (Length: 239)
Name: NF11655_high_71
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 7256826 - 7256953
Alignment:
| Q |
96 |
atctcactagactctctcgttagagaagagcatcagctcccatatttccaaatatgcacaattaatgttctaaaacattaacattacaataaaattgacc |
195 |
Q |
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| T |
7256826 |
atctcactggactctcccgtcagaggagagcatcagctcccatatttccaaatatgcacaattaatgttctaaaacattaacattacaataaaattgacc |
7256925 |
T |
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| Q |
196 |
agaaagaaacaaatatataggttgaatt |
223 |
Q |
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| T |
7256926 |
agaaagaaacaaatatataggttgaatt |
7256953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 7256669 - 7256764
Alignment:
| Q |
2 |
aagagattgtcgtgtatttgattgctgcaaatatcaagcagggtgcatatcccctttagtgaaattttcaatggagagagtgcagtggacatctat |
97 |
Q |
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| T |
7256669 |
aagagattgtcgtgtatttgattgctgcaaatatcaagcagggtgcatatcccctctagtgaaattttcaatggagagagtgcagtggacatctat |
7256764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 31228407 - 31228442
Alignment:
| Q |
59 |
agtgaaattttcaatggagagagtgcagtggacatc |
94 |
Q |
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| T |
31228407 |
agtgaaattttcaatggagagagtgcggtggacatc |
31228442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 12256977 - 12257029
Alignment:
| Q |
42 |
gggtgcatatcccctttagtgaaattttcaatggagagagtgcagtggacatc |
94 |
Q |
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| T |
12256977 |
gggtgcagatcccctccggtgaaattttcaatggagaaagtgcactggacatc |
12257029 |
T |
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