View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_high_72 (Length: 233)
Name: NF11655_high_72
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_high_72 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 39007679 - 39007478
Alignment:
| Q |
16 |
cagatgcaggagaggtcaagtgcaatatcgatgcagcaatattcaaggaacatagttgctatg-aatatgaatgtgtatcagaggaagctgagagagttc |
114 |
Q |
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| T |
39007679 |
cagatgcaggagaggtcaagtgcaatatcgatgcagcaatattcaaggaacatagttgctatggaatatgaatgtgtatcagaggaatttgagagagttc |
39007580 |
T |
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| Q |
115 |
atcaagttaaaacccaacttggttcttgggagtaccacaacaacatgaggcagaggcaatgagattaaaaga-gcgataaaatggtttgacaatatgagt |
213 |
Q |
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| T |
39007579 |
atcaagttaaaacccaacttggttcttgggagtaccacaacaacatgaaacagaggcaatgagactaaaagaggcgataaaatggtttgacaatatgagt |
39007480 |
T |
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| Q |
214 |
ct |
215 |
Q |
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|| |
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| T |
39007479 |
ct |
39007478 |
T |
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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 8294807 - 8295005
Alignment:
| Q |
19 |
atgcaggagaggtcaagtgcaatatcgatgcagcaatattcaaggaacatagttgctat-gaatatgaatgtgtatcagaggaa-gctgagagagttcat |
116 |
Q |
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| T |
8294807 |
atgcaggagaggtcaagtgcaatatcgttgcaacaatcttcaaggaacatggttgttatggaatgggaatgtacatcagaggaaggctcggtgagttcat |
8294906 |
T |
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| Q |
117 |
caagttaaaacccaacttggttcttgggagtaccacaacaacatgaggcagaggcaatgagattaaaaga-gcgataaaatggtttgacaatatgagtct |
215 |
Q |
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| T |
8294907 |
aaaggcaaaa-ccaccttggttcttaggagaaccacaaccacacgaagcggaggctaggggactaaaagaggcgataaaatggcttggaagtatgagtct |
8295005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 24588936 - 24588857
Alignment:
| Q |
24 |
ggagaggtcaagtgcaatatcgatgcagcaatattcaaggaacatagttgctat-gaatatgaatgtgtatcagaggaag |
102 |
Q |
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| T |
24588936 |
ggagaggtcaggtgcaatatcgatacaacaatcttcaaggaccatggttgttatggagtaggaatgtgtatcagacgaag |
24588857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 33027840 - 33027764
Alignment:
| Q |
27 |
gaggtcaagtgcaatatcgatgcagcaatattcaaggaacatagttgctat-gaatatgaatgtgtatcagaggaag |
102 |
Q |
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| T |
33027840 |
gaggtcaagtgcaatatcgatgcaacaatcttcaaagaacatggctgatatggaataggaatgtgtttcagaggaag |
33027764 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 35052048 - 35052005
Alignment:
| Q |
24 |
ggagaggtcaagtgcaatatcgatgcagcaatattcaaggaaca |
67 |
Q |
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| T |
35052048 |
ggagaggtcaagtgcaatattgatgtagcaatcttcaaggaaca |
35052005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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