View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_high_80 (Length: 206)
Name: NF11655_high_80
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_high_80 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 35907947 - 35907758
Alignment:
| Q |
1 |
ggctgtgtgcgattcctagctcatctttacatgcacaaccaagcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttc |
100 |
Q |
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| T |
35907947 |
ggctgtgtgcgattcctagctcatctttacatgcacaaccaagcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttc |
35907848 |
T |
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| Q |
101 |
taacggttgcccagaggccagatggcaaatcctacaaatcatttcgtcatccaaattttcaccaaaaccttcacatgtgccacagttcat |
190 |
Q |
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| T |
35907847 |
taacggttgcccagaggccagatggcaaatcctacaaatcatttcgtcatccaaattttcaccaaaaccttcacatgtgccacagttcat |
35907758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 35915539 - 35915371
Alignment:
| Q |
7 |
gtgcgattcctagctcatctttacatgcacaacca---agcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagtt-------- |
95 |
Q |
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| T |
35915539 |
gtgcaattcctagttcatctttacatgcacaaccaccaagcataatcaaatctgtatttttattagcactgtgtggagtgccaacagcagttgcttgact |
35915440 |
T |
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| Q |
96 |
-gcttctaacggttgcccagaggccagatggcaaatc-ctacaaatcatttcgtcatccaaattttcac |
162 |
Q |
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| T |
35915439 |
tgcttctaacggttgctcagagtccagatgagaaatctctacaaatcatttcatcatccaaattttcac |
35915371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 33911340 - 33911151
Alignment:
| Q |
1 |
ggctgtgtgcgattcctagctcatctttacatgcacaaccaagcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33911340 |
ggctgtgtgcgattcctagctcatctttacatgcacaaccaagcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttc |
33911241 |
T |
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| Q |
101 |
taacggttgcccagaggccagatggcaaatcctacaaatcatttcgtcatccaaattttcaccaaaaccttcacatgtgccacagttcat |
190 |
Q |
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| T |
33911240 |
taacggttgcccagaggccagatggcaaatcctacaaatcatttcgtcatccaaattttcaccaaaaccttcacatgtgccacagttcat |
33911151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 46537911 - 46538014
Alignment:
| Q |
1 |
ggctgtgtgcgattcctagctcatctttacatgcacaaccaagcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttc |
100 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||| | ||| |||| |||| |||||||| ||||||||||| ||||||| |
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| T |
46537911 |
ggctgtgtgcaatgcctagctcatctttacatgcacaaccaagcataatcaaacatttaccattattagcactatttggattgccaacagcatttgcttc |
46538010 |
T |
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| Q |
101 |
taac |
104 |
Q |
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|||| |
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| T |
46538011 |
taac |
46538014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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