View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_high_9 (Length: 619)
Name: NF11655_high_9
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 330 - 609
Target Start/End: Complemental strand, 38410813 - 38410534
Alignment:
| Q |
330 |
tgaaacataaaatagtatatatacacaaacaggttcatgtatgtctctaacggttagtcatggacttttttacacaaagcacaataatttcccttaggcg |
429 |
Q |
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| T |
38410813 |
tgaaacataaaatagcatatatacacaaacaggttcatgtatgtctctaacggttagtcatggacttttttacacaaagcacaataatttcccttaggcg |
38410714 |
T |
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| Q |
430 |
tgagttgatgtgcatctgatgcagtttttatcatctcgtgttgtgcatctgaatctgatgcagtttttggcatgtcttgttgtgaatgacctgatgcagt |
529 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38410713 |
tgagttgatgtgcatctgatgcagtttttattatctcttgttgtgcatttgaatctgatgcagtttttggcatgtcttgttgtgaatgatctgatgcagt |
38410614 |
T |
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| Q |
530 |
ttcaggttcagatggatgaatgttatccacacttgagggctccattacatgattaacaagtgaccttgttgcaccctttg |
609 |
Q |
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| T |
38410613 |
ttcagctgcaaatggatgaatgttatccacacttgagggctccattacatgattaacaagtgaccttgttgcaccctttg |
38410534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 38411053 - 38410811
Alignment:
| Q |
18 |
actatgatatcatacatccttgttggctaacctgaatcagttttagnnnnnnnttggtttttatgaaaacggtttttagaaaccaaactgaaccataaat |
117 |
Q |
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| T |
38411053 |
actatgatatcatacatccttgttggctaacctgaatcagttttagaaaaaagttggtttttatgaaaacggtatttagaaaccaaactg--ccataaat |
38410956 |
T |
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| Q |
118 |
ttggtttggttttaaaccatgcacacccctaatgagaggcaccggtctatatttttcattttcatttccacacacaacacaactggcaatgatgataaaa |
217 |
Q |
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| T |
38410955 |
ttggtttggttttaaaccatgcacacccctaacgagaggcaccagtctatatttttcattttcatttccacacacaacacaactggcaatgatgataaaa |
38410856 |
T |
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| Q |
218 |
aggccggtcttacggccaccatttacttctttggtagtagattga |
262 |
Q |
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| T |
38410855 |
aggccggtcttacggctaccatttacttctttggtagtagattga |
38410811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 331 - 594
Target Start/End: Original strand, 1090886 - 1091152
Alignment:
| Q |
331 |
gaaacataaaatagtatatatacacaaacaggttcatgtatgtctctaacggttagtcatggacttttttacacaaagcacaataatttcccttaggcgt |
430 |
Q |
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|||| ||||||||| |||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| |||| || |
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| T |
1090886 |
gaaagataaaatagcatatatacgcaaactggttcatgtatgtctctaactgttaatcatggacttttttacacaaggcacaataatttcctttagctgt |
1090985 |
T |
|
| Q |
431 |
gagttgatgtgcatctgatgcagtttttatcatctcgtgttgtgcatctgaatctgatgcagtttttggcatgtcttgttgtgaatgacctgatgcagtt |
530 |
Q |
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||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |||| |
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| T |
1090986 |
gagttgatgtgcatctgatgcagttattatcatctctttttgtgcatctgaatctgatgcagtttttggcgtgtctcgttgtgaatgatctgatgtagtt |
1091085 |
T |
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| Q |
531 |
tcaggttcagatggatga---atgttatccacacttgagggctccattacatgattaacaagtgacc |
594 |
Q |
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||| || ||| |||| || |||||||||||||||||| ||| || |||||||| ||||||||||| |
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| T |
1091086 |
tcaagtgcaggtggaggaatcatgttatccacacttgagtgctgcactacatgatcaacaagtgacc |
1091152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 170 - 264
Target Start/End: Complemental strand, 45062950 - 45062856
Alignment:
| Q |
170 |
ttttcattttcatttccacacacaacacaactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattgatt |
264 |
Q |
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| T |
45062950 |
ttttcattttcatttccacacacaacacagctggcaatgatgataaacatgccggtcttacggctaccatttacttctttggtagtagattgatt |
45062856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 45058960 - 45058895
Alignment:
| Q |
198 |
aactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattgatt |
264 |
Q |
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| T |
45058960 |
aactggcaatgatgataaaa-ggccggtcttacggcttccatttacttctatggtagtagattgatt |
45058895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 45059729 - 45059664
Alignment:
| Q |
198 |
aactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattgatt |
264 |
Q |
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| T |
45059729 |
aactggcaatgatgatataa-gttcggtcttaccgctaccatttacttctttggtagtagattgatt |
45059664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 45062120 - 45062056
Alignment:
| Q |
198 |
aactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattgatt |
264 |
Q |
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| T |
45062120 |
aactggcaatgatgataaaa-ggccggtcttacggctgccatttactt-attggtagtagattgatt |
45062056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 45060506 - 45060442
Alignment:
| Q |
198 |
aactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattgatt |
264 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||| |
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| T |
45060506 |
aactggcaatgatgataaaa-ggccggtcttacggctgccatttacgt-attggtagtagattgatt |
45060442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 45061313 - 45061249
Alignment:
| Q |
198 |
aactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattgatt |
264 |
Q |
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|||||||||||||||| |||||||||||||||| || |||||||||| ||||||||||||||||| |
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| T |
45061313 |
aactggcaatgatgat-aaaaggccggtcttacagctgccatttactt-attggtagtagattgatt |
45061249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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