View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11655_low_18 (Length: 458)

Name: NF11655_low_18
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11655_low_18
NF11655_low_18
[»] chr3 (3 HSPs)
chr3 (1-299)||(30354642-30354940)
chr3 (297-443)||(30355095-30355239)
chr3 (343-419)||(48351531-48351605)
[»] chr6 (3 HSPs)
chr6 (336-409)||(32598952-32599023)
chr6 (336-398)||(12753764-12753824)
chr6 (345-424)||(32112730-32112807)
[»] chr1 (3 HSPs)
chr1 (336-427)||(12767332-12767421)
chr1 (336-440)||(26980266-26980368)
chr1 (336-419)||(41948150-41948231)
[»] chr7 (3 HSPs)
chr7 (346-419)||(14795226-14795297)
chr7 (346-419)||(15242218-15242289)
chr7 (336-440)||(48374443-48374545)
[»] chr5 (1 HSPs)
chr5 (346-401)||(28223790-28223843)
[»] chr4 (1 HSPs)
chr4 (336-419)||(20454633-20454714)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 30354642 - 30354940
Alignment:
Q  1 aggtaaatataaggttttgatggaacgtgggaagaagaagaaaattacagggtaaaaaagagagagcaagaaggtgaagagctgaggaggccaaggtgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30354642 aggtaaatataaggttttgatggaacgtgggaagaagaagaaaattacagggtaaaaaagagagagcaagaaggtgaagagctgaggaggccaaggtgtg 30354741  T
Q  101 aacaaatatttaaaaaccctaattggaaagaaaatggaaggagaataagagatattcagcatctgaaactgagaaaacaaatcgctagactcaaagagtt 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30354742 aacaaatatttaaaaaccctaactggaaagaaaatggaaggagaataagagatattcagcatctgaaactgagaaaacaaatctctagactcaaagagtt 30354841  T
Q  201 gatttcaagacataagttttgtttccaatatgcatataaaaagatttctatnnnnnnnttgataagatttatgtataaataaatattgaaaagataata 299  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  30354842 gatttcaagacataagttttgtttccaatatgcatatgaaaagatttctataaaaaaattgataagatttatgtataaataaatattgaaaagataata 30354940  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 297 - 443
Target Start/End: Original strand, 30355095 - 30355239
Alignment:
Q  297 atacttccatcaatatacagtgaggcattgttgattctgtagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatca 396  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||  ||||||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  30355095 atacttccatcaatatacagtgaggcattgttcattctgc-gcaac-ttctcttttgaacattctctctaatactcacacttttttattagtttaaatca 30355192  T
Q  397 ttatgaatatacattttaaaaataaaactcatagaaagtggtggaac 443  Q
    || |||||||||||||| ||||||||||||||||||| |||||||||    
T  30355193 ttgtgaatatacattttgaaaataaaactcatagaaaatggtggaac 30355239  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 419
Target Start/End: Complemental strand, 48351605 - 48351531
Alignment:
Q  343 attctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaat 419  Q
    |||||||||| |||||| ||||||||||||   |||||  ||| ||||||||||||||| ||||||| ||| |||||    
T  48351605 attctcttttgaacattttctctaatactctttctctt--attgatttaaatcattatggatatacactttgaaaat 48351531  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 32598952 - 32599023
Alignment:
Q  336 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatataca 409  Q
    |||||| |||||||||| |||||||||| ||||||||||  ||||||||| |||||||||||| ||||| ||||    
T  32598952 tagcaacattctcttttaaacattctctttaatactcac--tcttttattgatttaaatcattgtgaatctaca 32599023  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 12753764 - 12753824
Alignment:
Q  336 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcatt 398  Q
    |||||| | ||||||||||||| |||||||||||||  | ||||||||||| |||||||||||    
T  12753764 tagcaacactctcttttcaacactctctctaatact--cgctcttttattagtttaaatcatt 12753824  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 424
Target Start/End: Original strand, 32112730 - 32112807
Alignment:
Q  345 tctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaataaaac 424  Q
    |||||||| |||||||||||||||| |  |||||| |||||  ||||||||||| || || |||| ||| ||||||||||    
T  32112730 tctcttttgaacattctctctaatatt--cactctcttattgttttaaatcattgtggatctacactttgaaaataaaac 32112807  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 427
Target Start/End: Original strand, 12767332 - 12767421
Alignment:
Q  336 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaataaaactca 427  Q
    |||||||| |||||||| || |  |||||||||||||||  |||||||||  ||||||||||||||| | |||| |||||||||| ||||||    
T  12767332 tagcaaaaatctcttttgaaaaccctctctaatactcac--tcttttattggtttaaatcattatgagtctacactttaaaaatagaactca 12767421  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 440
Target Start/End: Original strand, 26980266 - 26980368
Alignment:
Q  336 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaataaaactcatagaaagt 435  Q
    |||||| | ||||||||||||| ||||| |||||||  |||||| ||||| |||||||||||| || || || ||||| |||||  |||||| | ||| |    
T  26980266 tagcaacactctcttttcaacactctctataatact--cactctcttattgatttaaatcattgtggatgtatattttgaaaattgaactcacacaaaat 26980363  T
Q  436 ggtgg 440  Q
    |||||    
T  26980364 ggtgg 26980368  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 419
Target Start/End: Original strand, 41948150 - 41948231
Alignment:
Q  336 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaat 419  Q
    |||||| |||||||||| |||| ||||||||| |||||| |||||  ||| |||||||||||| || || |||| ||| |||||    
T  41948150 tagcaatattctcttttgaacactctctctaacactcactctctt--attgatttaaatcattgtggatttacactttgaaaat 41948231  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 419
Target Start/End: Complemental strand, 14795297 - 14795226
Alignment:
Q  346 ctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaat 419  Q
    ||||||| |||| ||||||| |||||||| |||||  |||| |||||||||||||| ||||||| |||||||||    
T  14795297 ctcttttgaacactctctcttatactcactctctt--attagtttaaatcattatggatatacactttaaaaat 14795226  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 419
Target Start/End: Complemental strand, 15242289 - 15242218
Alignment:
Q  346 ctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaat 419  Q
    ||||||| |||| ||||||| |||||||| |||||  |||| |||||||||||||| ||||||| |||||||||    
T  15242289 ctcttttgaacactctctcttatactcactctctt--attagtttaaatcattatggatatacactttaaaaat 15242218  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 440
Target Start/End: Original strand, 48374443 - 48374545
Alignment:
Q  336 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaataaaactcatagaaagt 435  Q
    |||||| | |||||||| |||| |||||||||||||||| ||||| |  |  ||||||| ||| ||| |||||| |||  ||||| ||| ||||||||||    
T  48374443 tagcaacactctcttttgaacactctctctaatactcactctcttgt--tggtttaaattattgtgagtatacactttggaaatagaacccatagaaagt 48374540  T
Q  436 ggtgg 440  Q
    |||||    
T  48374541 ggtgg 48374545  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 28223790 - 28223843
Alignment:
Q  346 ctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatg 401  Q
    ||||||| ||||| ||||||||||||  ||||||||||||  ||||||||||||||    
T  28223790 ctcttttgaacatcctctctaatact--cactcttttattggtttaaatcattatg 28223843  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 419
Target Start/End: Complemental strand, 20454714 - 20454633
Alignment:
Q  336 tagcaaaattctcttttcaacattctctctaatactcacactcttttattaatttaaatcattatgaatatacattttaaaaat 419  Q
    |||||| |||||||||| |||| ||||||||| ||||||  ||| ||||| |||||||||||| || || |||| ||| |||||    
T  20454714 tagcaacattctcttttgaacactctctctaacactcac--tctgttattgatttaaatcattgtggatctacactttgaaaat 20454633  T

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