View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_23 (Length: 428)
Name: NF11655_low_23
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 5 - 340
Target Start/End: Original strand, 16916946 - 16917278
Alignment:
| Q |
5 |
tcacaactttctaagttaagcattcagagtatccctatatttgaacttccaagccttccctctgttgaggaagtttatgttggaggaaaaactaaagagt |
104 |
Q |
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| T |
16916946 |
tcacaactttctaagttaagcattcagagtatccctatatttgaacttccaagccttccctctgttaaggaagtttatgttggaggagaaactgaagagt |
16917045 |
T |
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| Q |
105 |
ttaatgctcatggtgcatctttcctcctgagaaatattgcagttaagatgcctaacctcacagaacttatgattgaaaactttgatcaaattaaggtact |
204 |
Q |
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| T |
16917046 |
ttaatgatcatggtgcatctttcct---gagagatattgcaggtaagatgcctaacctcacagaacttatgattgaaggctttcatcaaatcacggtact |
16917142 |
T |
|
| Q |
205 |
acctattgaacttagctctctcggttccctacagaaactctacatttcatgttgtcgtaatcttgagtccattcctaacatgtcttcgagttctcttcaa |
304 |
Q |
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| T |
16917143 |
acctaatgaactcagatctctcagttccctacagaaactctacatttcatgttgtggtaatcttgagtccattcctaacatgtcttcgagttctcttcaa |
16917242 |
T |
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| Q |
305 |
gttttgagctttgcactttgcaataggttaaaatcc |
340 |
Q |
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| T |
16917243 |
gttttgggctttgcactttgcaatagcttaaaatcc |
16917278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 16911747 - 16911978
Alignment:
| Q |
1 |
gctatcacaactttctaagttaagcattcagagtatccctatatttgaacttccaagccttccctctgttgaggaagtttatgttggaggaaaaactaaa |
100 |
Q |
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| T |
16911747 |
gctatcacaactttctaagttaagcattcagagtatccctcaatttgaacttccaagccttccctctgttaaggaagtttatgttggaggagaaactgaa |
16911846 |
T |
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| Q |
101 |
gagtttaatgctcatggtgcatctttcctcctgagaaatattgcagttaagatgcctaacctcacagaacttatgattgaaaactttgatcaaattaagg |
200 |
Q |
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| T |
16911847 |
gaggatattgatcatgaagcatctt---tcctgagagatattgcaggtaagatgcctaacctcaaagaacttatgattgacgcctttcatcaactcacgg |
16911943 |
T |
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| Q |
201 |
tactacctattgaacttagctctctcggttcccta |
235 |
Q |
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| T |
16911944 |
tactacctaatgaactcagctctctccgttcccta |
16911978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 280
Target Start/End: Original strand, 16975084 - 16975207
Alignment:
| Q |
157 |
taacctcacagaacttatgattgaaaactttgatcaaattaaggtactacctattgaacttagctctctcggttccctacagaaactctacatttcatgt |
256 |
Q |
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| T |
16975084 |
taacctcaaagaacttatgattgaaaactttgatgaacttgaggtactacctaatgaactcaactctcttagatccctggaaaaactatacatctcatgt |
16975183 |
T |
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| Q |
257 |
tgtcgtaatcttgagtccattcct |
280 |
Q |
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| | |||| |||||||| |||||| |
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| T |
16975184 |
tttggtaagcttgagtctattcct |
16975207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 273
Target Start/End: Complemental strand, 16837029 - 16836923
Alignment:
| Q |
167 |
gaacttatgattgaaaactttgatcaaattaaggtactacctattgaacttagctctctcggttccctacagaaactctacatttcatgttgtcgtaatc |
266 |
Q |
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| T |
16837029 |
gaacttttcattcaaaagtttgatgaactcaaggtactacctaatgaactcaactctctcagttccctacaaaaactattaatttcattttgtccaaagc |
16836930 |
T |
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| Q |
267 |
ttgagtc |
273 |
Q |
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| T |
16836929 |
ttgagtc |
16836923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 16842140 - 16842070
Alignment:
| Q |
167 |
gaacttatgattgaaaactttgatcaaattaaggtactacctattgaacttagctctctcggttccctaca |
237 |
Q |
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| T |
16842140 |
gaacttttcattgaaaattttgatgaactcaaggtactacctaatgaactcaactctctcagttccctaca |
16842070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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