View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_24 (Length: 418)
Name: NF11655_low_24
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 44065130 - 44065517
Alignment:
| Q |
17 |
atgaagtagagatgtaaaatagttgaaaattataatgctttaattgaatttcctttgtttcatatatatgatattttaaaattttgaatgaacatatgac |
116 |
Q |
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| T |
44065130 |
atgaagtagagatgaaaaatagttgaaaattctaatgctttaattgaatttcctttgtttcatatatatgatattttaaaattttgaatgaagatgtgat |
44065229 |
T |
|
| Q |
117 |
gttaaagtctcatagattttgcagcattgaagcgcattgttgctctcgacactctctctaactccatgccatattcataattaattaatcaactaactca |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44065230 |
gttaaagtctagtagattttgcagcattgaagcgcattgttgctctcgacactctctctaacttcatgccatattcataattaattaatcaactaactca |
44065329 |
T |
|
| Q |
217 |
tgtagattgtatttacgtaaacaacaaaccaaaaagagtcgacaagttttggcttaatatagattgataagccaccattaacgattcaataaccgataaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44065330 |
tgtagattgtatttacgtaaacaacaaaccaaaaagagtcgacaagttttggcttaatatagattgataagccaccattaacgattcaataaccgataaa |
44065429 |
T |
|
| Q |
317 |
gtttaatgtgctctccctcgtcatgaagtagttggcaggtcacttttagccggcactttgtacaataatgtatttttctttgctttttc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44065430 |
gtttaatgtgctctccctcgtcatgaagtagttggcaggtcacttttagccggcac-ttgtacaataatgtatttttctttgctttttc |
44065517 |
T |
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