View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_25 (Length: 417)
Name: NF11655_low_25
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 42087090 - 42087500
Alignment:
| Q |
1 |
tctgtgctattttcctttgcttcccttcctccatcatgagatgtctccaccatataatttagcttctgaacctgcgaggnnnnnnntaatcacacgggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| || |
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| T |
42087090 |
tctgtgctattttcctttgcttcccttcctccatcatgagatgtttccaccatataacttagcttctgaacctgcgaggaaaaaaaaaatcacacggtta |
42087189 |
T |
|
| Q |
101 |
agcttaagttcaactcatttaattaatcgagcctaatacgaagcttgagtaaataaataaacaaacttaaccgaatattttgcgagttgagcatgaatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087190 |
agcttaagttcaactcatttaattaatcgagcctaatacgaagcttgagtaaataaataaacaaacttaaccgaatattttgcgagttgagcatgaatag |
42087289 |
T |
|
| Q |
201 |
ttcacgaatagctgaactcgtttaaattaagctgtttatcgagacacaactctagttatgttacaatataattgcaagaaccaaagtaccaacttacctc |
300 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42087290 |
ttcacgaatagctgaactcgtttaaattaaactgtttatcgagacacaactatagttatgttacaatataattgcaagaaccaaagtactaacttacctc |
42087389 |
T |
|
| Q |
301 |
tgattgcaaagactctttctcttccttaaggcactgaaacttagaagctaaattatcataatcatctttgagttttctgtattcttgttctatccttttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42087390 |
tgattgcaaagactctttctcttccttaaggcactgaaacttagaagctaaattatcatattcatctttgagttttctgtattcttgttctatccttttt |
42087489 |
T |
|
| Q |
401 |
gatgtccatct |
411 |
Q |
| |
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||| ||||||| |
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| T |
42087490 |
gatttccatct |
42087500 |
T |
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