View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11655_low_27 (Length: 405)

Name: NF11655_low_27
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11655_low_27
NF11655_low_27
[»] chr4 (2 HSPs)
chr4 (18-319)||(35202271-35202572)
chr4 (86-201)||(22483403-22483518)
[»] chr2 (2 HSPs)
chr2 (44-219)||(3945850-3946025)
chr2 (86-220)||(39741065-39741199)
[»] chr1 (2 HSPs)
chr1 (65-218)||(24878842-24878995)
chr1 (86-219)||(34645998-34646131)
[»] chr5 (2 HSPs)
chr5 (64-175)||(13481015-13481126)
chr5 (369-405)||(2501988-2502024)
[»] chr3 (2 HSPs)
chr3 (53-220)||(41895775-41895942)
chr3 (65-220)||(34976123-34976278)
[»] chr8 (2 HSPs)
chr8 (65-213)||(28437310-28437458)
chr8 (65-174)||(5211208-5211317)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 35202271 - 35202572
Alignment:
Q  18 aaaaaccaggtcaagagcttcttcaacagcaacaacaagctttaaggtgtccacgttgtgattcatcaaacactaaattctgttactataataactatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202271 aaaaaccaggtcaagagcttcttcaacagcaacaacaagctttaaggtgtccacgttgtgattcatcaaacactaaattctgttactataataactatag 35202370  T
Q  118 tttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202371 tttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaac 35202470  T
Q  218 aaacgtcttaaacgaccaaatcactcctcttcaaatattgatactgctactgcttctccttcttcttcaactcctactagtgctaattcaaaccctcctt 317  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35202471 aaacgtcttaaacgaccaaatcactcttcttcaaatattgatactgctactgcttctccttcttcttcaactcctaatagtgctaattcaaaccctcctt 35202570  T
Q  318 ct 319  Q
    ||    
T  35202571 ct 35202572  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 201
Target Start/End: Complemental strand, 22483518 - 22483403
Alignment:
Q  86 aacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaa 185  Q
    ||||| ||||| |||||||| || || || ||| | |||||||||||| | ||||||||  | ||||  ||||||||||| | |||||| ||||| || |    
T  22483518 aacaccaaattttgttactacaacaattacagtctttcacaaccaagatatttctgcaagtcttgtaggagatattggactaaaggtggtacactaagga 22483419  T
Q  186 acgttcctgttggtgg 201  Q
    | ||||||||||||||    
T  22483418 atgttcctgttggtgg 22483403  T

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Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 3946025 - 3945850
Alignment:
Q  44 cagcaacaacaagctttaaggtgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgca 143  Q
    ||||||||||||||| | | ||||||||||||||| ||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| ||||| |    
T  3946025 cagcaacaacaagctctcaagtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgta 3945926  T
Q  144 aagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaa 219  Q
    |||| || ||| | ||||||||||||||||| || |||||||| ||||||||||||||||||| ||||| ||||||    
T  3945925 aagcttgcaaacgttattggacaagaggtggtactcttagaaatgttcctgttggtggtggttacagaagaaacaa 3945850  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 39741065 - 39741199
Alignment:
Q  86 aacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaa 185  Q
    ||||| ||||||||||| || || ||||| ||| |  | || |||||| | ||||||||| | || | ||| |||||||| | |||||||||| | || |    
T  39741065 aacaccaaattctgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggtattggaccaaaggtggaacattaagga 39741164  T
Q  186 acgttcctgttggtggtggttgcagaaaaaacaaa 220  Q
    | ||||||||||| ||||| |||||||||||||||    
T  39741165 atgttcctgttggaggtggatgcagaaaaaacaaa 39741199  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 65 - 218
Target Start/End: Original strand, 24878842 - 24878995
Alignment:
Q  65 tgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgga 164  Q
    |||||| | |||| ||| |||||||| |||||||| ||||| |||||||| || ||| | ||||||||| | || |||||||  || | ||| |||||||    
T  24878842 tgtccaagatgtggttcttcaaacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattgga 24878941  T
Q  165 caagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaaca 218  Q
    ||| ||||||| | || ||||| ||||||||||||||||| |||||||||||||    
T  24878942 caaaaggtggatccctcagaaatgttcctgttggtggtggctgcagaaaaaaca 24878995  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 34645998 - 34646131
Alignment:
Q  86 aacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaa 185  Q
    ||||| ||||| |||||||| || |||||||||||  ||||||||||| | ||||||||| | |||| ||| ||||||||   ||||||| |  ||||||    
T  34645998 aacacaaaattttgttactacaacaactatagtttgacacaaccaagatatttctgcaaaacatgtagaaggtattggactcaaggtggatccattagaa 34646097  T
Q  186 acgttcctgttggtggtggttgcagaaaaaacaa 219  Q
    || ||||||||||||||||||  |||||||||||    
T  34646098 acattcctgttggtggtggttcaagaaaaaacaa 34646131  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 13481015 - 13481126
Alignment:
Q  64 gtgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgg 163  Q
    ||||||| | ||||| ||| | ||||| |||||||| ||||| || |||||||| ||| ||||||||||||| ||||||||| | |||| ||||||||||    
T  13481015 gtgtccaagatgtgactcacccaacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaaacatgtagaagatattgg 13481114  T
Q  164 acaagaggtgga 175  Q
    |||| |||||||    
T  13481115 acaaaaggtgga 13481126  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 2501988 - 2502024
Alignment:
Q  369 tttactgcttcattgttaaaatcagcaaccaagtttc 405  Q
    |||||||||||||||||||||||||||||||||||||    
T  2501988 tttactgcttcattgttaaaatcagcaaccaagtttc 2502024  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 41895775 - 41895942
Alignment:
Q  53 caagctttaaggtgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgta 152  Q
    ||||||||||  |||||| | ||  ||||| | ||||| |||||||||||||| |||||||||||  | |||||||||||  |||| |||||| ||||||    
T  41895775 caagctttaaactgtccaaggtgcaattcaactaacacaaaattctgttactacaataactatagcctctcacaaccaaggtacttttgcaaaacctgta 41895874  T
Q  153 aaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaaa 220  Q
     ||| ||||||||   ||||||  |  | ||||| |||||||| ||||||||||  ||||||||||||    
T  41895875 gaaggtattggactgaaggtggttctttaagaaatgttcctgtaggtggtggttcaagaaaaaacaaa 41895942  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 220
Target Start/End: Complemental strand, 34976278 - 34976123
Alignment:
Q  65 tgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgga 164  Q
    |||||| | ||||||||| |  |||| |||||||| ||||| || || || ||| | || || |||||  ||||||||||  | |||| ||| |||||||    
T  34976278 tgtccaaggtgtgattcaactcacaccaaattctgctactacaacaattacagtctctctcagccaaggtacttctgcaagacttgtagaaggtattgga 34976179  T
Q  165 caagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaaa 220  Q
    | | ||| ||||||||||| ||| | ||||||||||| || || ||||||||||||    
T  34976178 ccaaaggaggaacacttaggaacatccctgttggtggaggctgtagaaaaaacaaa 34976123  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 28437310 - 28437458
Alignment:
Q  65 tgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgga 164  Q
    |||||| | ||||||||  ||||||| |||||||||||||| || ||||| ||| |  | ||||||||||| ||||||||| | || | |||||||||||    
T  28437310 tgtccaagatgtgattctccaaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaacatgcagaagatattgga 28437409  T
Q  165 caagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaa 213  Q
    |||  |||||| |  |  | ||||||||  ||||||||||||| |||||    
T  28437410 caaatggtggatcgttgcgtaacgttccgattggtggtggttgtagaaa 28437458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 5211317 - 5211208
Alignment:
Q  65 tgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgga 164  Q
    |||||||||||||| |||   ||||| |||||||| ||||| || ||||| | | | ||||||||| | || || ||||||  |||||||||||||||||    
T  5211317 tgtccacgttgtgaatcaaacaacacaaaattctgctactacaacaactacaatctctcacaaccacgccatttttgcaaaaactgtaaaagatattgga 5211218  T
Q  165 caagaggtgg 174  Q
    ||| ||||||    
T  5211217 caaaaggtgg 5211208  T

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