View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_28 (Length: 399)
Name: NF11655_low_28
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_28 |
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| [»] chr8 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 35907698 - 35907300
Alignment:
| Q |
1 |
acttgcacagccctgattcattagttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaacaca |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907698 |
acttgcgcagccctgattcattagttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaacaca |
35907599 |
T |
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| Q |
101 |
ggtctctagtgtttcccgattaagcgaattataactagtcccttgatcaacactatgcaattcattgtcgattttttcaggatcaccaccaatgttctga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35907598 |
ggtctctagtgtttcccgattaagcgaattataactagtcccttgatcaacactatgcaattcattgtcaattttttcaggatcaccaccaatgttctga |
35907499 |
T |
|
| Q |
201 |
ctcctaacttctaaagctttctcctctaacttctcattcaatacaagatcattgcacgtctcttctgaattccgatcttcaccgcatacactaaccctga |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907498 |
ctcctaacttctaaagctttctcctctaactcctcattcaatacaagatcattgcacgtctcttctgaattccgatcttcaccgcatacactaaccctga |
35907399 |
T |
|
| Q |
301 |
cacccaaactatgtccagctcctgcatcagttgcaacgccttcaaccaaattaatcaaattcttatcaacccctttatcaacatgatccaacatttcac |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907398 |
cacccaaactatgtccagctcctgcatcagttgcaacgccttcaaccaaattaatcaaattcttatcaacccctttatcaacatgatccaacatttcac |
35907300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 360
Target Start/End: Complemental strand, 35915154 - 35914977
Alignment:
| Q |
181 |
gatcaccaccaatgttctgactcctaacttctaaagctttctcctctaacttctcattcaatacaagatcattgcacgtctcttctgaattccgatcttc |
280 |
Q |
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||||||||||||||||||||| ||| |||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
35915154 |
gatcaccaccaatgttctgacccctcacttctaagtgtttctcctttaactcctcattcaatacaagatcattgcagttctcttctgaattccggtcttg |
35915055 |
T |
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| Q |
281 |
accgcatacactaaccctgacacccaaactatgtccagctcctgcatcagttgcaacgccttcaaccaaattaatcaaat |
360 |
Q |
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| ||||||||||||| | ||||| |||| |||||||||||||||||||||||| ||||||||||||| | |||||| |
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| T |
35915054 |
aa-gcatacactaaccttataacccag-ctatatccagctcctgcatcagttgcaactccttcaaccaaatgactcaaat |
35914977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 35915298 - 35915257
Alignment:
| Q |
12 |
cctgattcattagttttagcttccaattttctattatctcca |
53 |
Q |
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| T |
35915298 |
cctggttcattagttttagcttccaattttctattatctcca |
35915257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 33911091 - 33910693
Alignment:
| Q |
1 |
acttgcacagccctgattcattagttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaacaca |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33911091 |
acttgcgcagccctgattcattagttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaataca |
33910992 |
T |
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| Q |
101 |
ggtctctagtgtttcccgattaagcgaattataactagtcccttgatcaacactatgcaattcattgtcgattttttcaggatcaccaccaatgttctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33910991 |
ggtctctagtgtttcccgattaagcgaattataactagtcccttgatcaacactatgcaattcattgtcgattttttcaggatcaccaccaatgttctga |
33910892 |
T |
|
| Q |
201 |
ctcctaacttctaaagctttctcctctaacttctcattcaatacaagatcattgcacgtctcttctgaattccgatcttcaccgcatacactaaccctga |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
33910891 |
ctcctaacttctaaagctttctcctctaactcctcattcaatacaagatcattgcacgtctcttctgaattccgatcttcactgcatatactaaccctga |
33910792 |
T |
|
| Q |
301 |
cacccaaactatgtccagctcctgcatcagttgcaacgccttcaaccaaattaatcaaattcttatcaacccctttatcaacatgatccaacatttcac |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33910791 |
cacccaaactatgtccagctcctgcatcagttgcaacgccttcaaccaaattaatcaaattcttatcaacccctttatcaacatgatccaacatttcac |
33910693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 41140812 - 41140700
Alignment:
| Q |
13 |
ctgattcattagttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaacacaggtctctagtgt |
112 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
41140812 |
ctgattcattagttttagcttccaatcttctattatctccattgac----acac--tcatcttgagcagaagaatctattacaacacaggtctcaagttc |
41140719 |
T |
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| Q |
113 |
ttcccgattaagcgaatta |
131 |
Q |
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|||| ||||| ||||||| |
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| T |
41140718 |
ttccttattaaacgaatta |
41140700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 399
Target Start/End: Complemental strand, 41140658 - 41140522
Alignment:
| Q |
264 |
tctgaattccgatcttcaccgcatacactaaccctgacacccaaactatgtccagctcctgcatcagttgcaacgccttcaaccaaattaatcaaatt-c |
362 |
Q |
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|||||||| ||||||||| ||||||||||||| || || |||| ||||||||| ||||||||||||||||||| ||||||| || || ||||||| | |
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| T |
41140658 |
tctgaattttgatcttcactgcatacactaaccttgtcatccaagctatgtccatctcctgcatcagttgcaactccttcaagtaagttgctcaaattcc |
41140559 |
T |
|
| Q |
363 |
ttatcaacccctttatcaacatgatccaacatttcac |
399 |
Q |
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|| ||||||||||||||||||| |||||||||||| |
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| T |
41140558 |
ccataaacccctttatcaacatgagccaacatttcac |
41140522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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