View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11655_low_3 (Length: 947)

Name: NF11655_low_3
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11655_low_3
NF11655_low_3
[»] chr7 (5 HSPs)
chr7 (27-595)||(24624502-24625069)
chr7 (657-903)||(24625133-24625375)
chr7 (734-801)||(41020506-41020573)
chr7 (743-801)||(27093404-27093462)
chr7 (743-801)||(27184839-27184897)
[»] chr5 (1 HSPs)
chr5 (736-801)||(23012392-23012457)
[»] chr4 (4 HSPs)
chr4 (754-801)||(13134460-13134507)
chr4 (754-801)||(40742601-40742648)
chr4 (736-801)||(4781255-4781320)
chr4 (764-801)||(21539879-21539916)
[»] chr2 (3 HSPs)
chr2 (738-801)||(31808087-31808150)
chr2 (744-801)||(37411236-37411293)
chr2 (758-801)||(30527601-30527644)
[»] chr8 (2 HSPs)
chr8 (736-801)||(33405368-33405433)
chr8 (738-801)||(31580113-31580176)
[»] chr6 (3 HSPs)
chr6 (736-801)||(13364689-13364754)
chr6 (754-804)||(17411870-17411920)
chr6 (736-801)||(9658889-9658954)
[»] chr1 (3 HSPs)
chr1 (754-801)||(35999324-35999371)
chr1 (737-798)||(13997896-13997957)
chr1 (737-806)||(21530694-21530763)
[»] scaffold0697 (1 HSPs)
scaffold0697 (737-806)||(1649-1718)
[»] chr3 (1 HSPs)
chr3 (752-801)||(29508454-29508503)


Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 27 - 595
Target Start/End: Original strand, 24624502 - 24625069
Alignment:
Q  27 ggtgtataccatttattgttttagtggttcaataatatgatatgcaagactcgaattttgtgtggagaagtggtatatctctttcttgtgttcttgaaca 126  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  24624502 ggtgtataccattgattgttttagtggttcaataatatgatatgcaagactcatattttgtgtggagaagtggtatatctctttcttgtgttcttgaaca 24624601  T
Q  127 tcttctcattgctgctccggattttcctcaacaagattaaacataattttatgaggaattgagtatgataaacaaaaataatctaatacagccataaaac 226  Q
    |  |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  |    
T  24624602 ttgtctcgtcgctgctccggattttcctcaacaagattaaacataattttatgaggaattgagtatggtaaacaaaaataatctaatatagccataaggc 24624701  T
Q  227 aaatactagatggagcttctgctggatctaatcttaacttgtatttaaatccaaaatcttatagtaggtcacacgtaatttcacaaactctttaaccttg 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24624702 aaatactagatggagcttctgctggatctaatcttaacttgtatttaaatccaaaatcttatagtaggtcacacgtaatttcacaaactctttaaccttg 24624801  T
Q  327 cgtcttgtctctaaatttttcacttaacaagaacaattaaccaaccctaatctaaacacagattttattctatcaataaagtgtaatcttaacctttccc 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24624802 cgtcttgtctctaaatttttcacttaacaagaacaattaaccaaccctaatctaaacacagattttattctatcaataaagtgtaatcttaacctttccc 24624901  T
Q  427 attgaatctaactttttaatgcctatacaaaacagagcacctttcgttcacttcacttcttacttatacacctcaccaaaatctcactcaccccatttaa 526  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24624902 attgaatctaactttttaattcctatacaaaacagagcacctttcgttcacttcacttcttacttatacacctcaccaaaatctcactcaccccatttaa 24625001  T
Q  527 cctcctatactctgcgtcatctctcacatcaccactaaccacacacactcacacccatatctctctcaa 595  Q
     | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24625002 tcccctatactctgcgtcatctctcacatcaccactaaccaca-acactcacacccatatctctctcaa 24625069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 657 - 903
Target Start/End: Original strand, 24625133 - 24625375
Alignment:
Q  657 ttctctctatgactatcacacatagtacttcctatgttcctattggacactacctatcgagcatggacatttttta-attagacatgtgtcgtgttcaac 755  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||| |||||||| ||||| ||||||||    
T  24625133 ttctctctatgactatcacacatagtacttcctatgttcctattagacactacctattgagcacgaacattttttagattagacacgtgtcatgttcaac 24625232  T
Q  756 atcgacacatataataacactaaattttatgattttcttaaattatcaacgatattaatgtgtctgtatcgtgtctgatgtccgtatttgtgtttcatat 855  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     |||| | ||||||| |  || ||||||||    
T  24625233 atcaacatatataataacactaaattttatgattttcttaaattatcaacgatattaatgtctctg----atgtccg-tgtccgtgtccgtatttcatat 24625327  T
Q  856 gaagttaccctttattactttatttcttatattattaacggtgtcaac 903  Q
    |||  |||||||||||| || ||||||||||||||||||||| |||||    
T  24625328 gaaactaccctttattatttcatttcttatattattaacggtatcaac 24625375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 734 - 801
Target Start/End: Complemental strand, 41020573 - 41020506
Alignment:
Q  734 ttagacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||| ||||||||||||||||| |||| |||||||| |||||||||| | |||||||  ||||||||    
T  41020573 ttagatatgtgtcgtgttcaacaccgacgcatataattacactaaattatgtgatttttgtaaattat 41020506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 743 - 801
Target Start/End: Original strand, 27093404 - 27093462
Alignment:
Q  743 tgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||||||  |||| |||| |||||||| |||||||||| | |||||||||||||||||    
T  27093404 tgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattat 27093462  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 743 - 801
Target Start/End: Complemental strand, 27184897 - 27184839
Alignment:
Q  743 tgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||||||  |||| |||| |||||||| |||||||||| | |||||||||||||||||    
T  27184897 tgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattat 27184839  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 736 - 801
Target Start/End: Original strand, 23012392 - 23012457
Alignment:
Q  736 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||||||||||||| ||||| ||||||||||||| ||| |||||| ||||||||||| |||||||    
T  23012392 agacatgtgtcgtgtccaacaccgacacatataattacattaaattatatgattttctcaaattat 23012457  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 754 - 801
Target Start/End: Complemental strand, 13134507 - 13134460
Alignment:
Q  754 acatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||||||||||||||| |||||||||| | |||||||||||||||||    
T  13134507 acatcgacacatataattacactaaattatgtgattttcttaaattat 13134460  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 754 - 801
Target Start/End: Complemental strand, 40742648 - 40742601
Alignment:
Q  754 acatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||||||||||||||| |||||| ||| ||||||||||| |||||||    
T  40742648 acatcgacacatataattacactagattatatgattttctcaaattat 40742601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 801
Target Start/End: Complemental strand, 4781320 - 4781255
Alignment:
Q  736 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||||||||| | |  |||||||| ||||||||| |||||||||| ||||| ||| |||||||||    
T  4781320 agacatgtgtcatatctaacatcgatacatataatcacactaaattatatgagttttttaaattat 4781255  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 801
Target Start/End: Original strand, 21539879 - 21539916
Alignment:
Q  764 atataataacactaaattttatgattttcttaaattat 801  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  21539879 atataattacactaaattatatgattttcttaaattat 21539916  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 738 - 801
Target Start/End: Complemental strand, 31808150 - 31808087
Alignment:
Q  738 acatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    |||||||||||||||||||  |||||||||||| ||||| |||| | ||||||| |||||||||    
T  31808150 acatgtgtcgtgttcaacactgacacatataattacactgaattatgtgattttgttaaattat 31808087  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 744 - 801
Target Start/End: Original strand, 37411236 - 37411293
Alignment:
Q  744 gtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||||||| ||||||||||||||||| ||||| |||| | ||||||||| |||||||    
T  37411236 gtcgtgttcgacatcgacacatataatcacactgaattatgtgattttctcaaattat 37411293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 758 - 801
Target Start/End: Original strand, 30527601 - 30527644
Alignment:
Q  758 cgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||    
T  30527601 cgacacatataattacactaaattatatgattttctcaaattat 30527644  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 736 - 801
Target Start/End: Original strand, 33405368 - 33405433
Alignment:
Q  736 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||||||||||||| | ||| ||||||||||||| |||||||||| | || |||||| |||||||    
T  33405368 agacatgtgtcgtgtccgacaccgacacatataattacactaaattatgtgtttttctcaaattat 33405433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 738 - 801
Target Start/End: Original strand, 31580113 - 31580176
Alignment:
Q  738 acatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    |||||||||| || | |||||||||| |||||| ||||| |||| | |||||||||||||||||    
T  31580113 acatgtgtcgcgtccgacatcgacacctataattacactcaattatgtgattttcttaaattat 31580176  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 736 - 801
Target Start/End: Original strand, 13364689 - 13364754
Alignment:
Q  736 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    |||||||| |||||| ||||| |||||||||| || ||||| |||| ||||||||||| |||||||    
T  13364689 agacatgtatcgtgtccaacaccgacacatatgattacactgaattatatgattttctcaaattat 13364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 754 - 804
Target Start/End: Original strand, 17411870 - 17411920
Alignment:
Q  754 acatcgacacatataataacactaaattttatgattttcttaaattatcaa 804  Q
    ||||| ||||||||||| | ||| |||| ||||||||||||||||||||||    
T  17411870 acatccacacatataattatactgaattatatgattttcttaaattatcaa 17411920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 801
Target Start/End: Complemental strand, 9658954 - 9658889
Alignment:
Q  736 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||| |||||||||  |||| ||||| ||||||| ||||| |||| | |||||||||||||||||    
T  9658954 agacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattat 9658889  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 754 - 801
Target Start/End: Original strand, 35999324 - 35999371
Alignment:
Q  754 acatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||| ||||||||||| | |||||||| |||||||||||||||||||    
T  35999324 acatcaacacatataattatactaaattatatgattttcttaaattat 35999371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 737 - 798
Target Start/End: Complemental strand, 13997957 - 13997896
Alignment:
Q  737 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaat 798  Q
    |||||||||||| | ||||| ||||||||||||| ||||| |||| | ||||||| ||||||    
T  13997957 gacatgtgtcgtctccaacaccgacacatataattacactgaattatgtgatttttttaaat 13997896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 737 - 806
Target Start/End: Complemental strand, 21530763 - 21530694
Alignment:
Q  737 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattatcaacg 806  Q
    |||||||||||||| | ||| |||||| |||||| | || ||||| ||||||||||| ||||||| ||||    
T  21530763 gacatgtgtcgtgtccgacaccgacacttataattataccaaattatatgattttctcaaattattaacg 21530694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 737 - 806
Target Start/End: Complemental strand, 1718 - 1649
Alignment:
Q  737 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattatcaacg 806  Q
    |||||||||||||| | ||| |||||| |||||| | || ||||| ||||||||||| ||||||| ||||    
T  1718 gacatgtgtcgtgtccgacaccgacacttataattataccaaattatatgattttctcaaattattaacg 1649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 801
Target Start/End: Complemental strand, 29508503 - 29508454
Alignment:
Q  752 caacatcgacacatataataacactaaattttatgattttcttaaattat 801  Q
    ||||||||||||||||||| ||||| |||| ||||||||| | |||||||    
T  29508503 caacatcgacacatataattacactgaattatatgattttttcaaattat 29508454  T

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