View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_32 (Length: 380)
Name: NF11655_low_32
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 5 - 371
Target Start/End: Original strand, 9578434 - 9578800
Alignment:
| Q |
5 |
caaacattttcatccaactcacttcattgaaatggtgaatattttcttccactttcataagcttcgaatcagcttatattccatatctcaaagcaagaag |
104 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
9578434 |
caaacattgtcatccaactcacttcattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaag |
9578533 |
T |
|
| Q |
105 |
ataaacgttttagacattgctaagtgttacttccaagttcctattttacatcacattaaatttggtcttccttctcatgtttgcaaaatgaagcctccgt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9578534 |
ataaacgttttagacattgctaagtgttacttccaagttcctattttacatcacattaaatttggtcttccttctcatgtttgcaaaatgaagcctccgt |
9578633 |
T |
|
| Q |
205 |
cttccttataccatgatatgcttctataattttatctaagagctgttcaagattcaccctactaatgaaatatatttatatagaatcaacgagcttctga |
304 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9578634 |
cttccttataccatgatatacttctataattttatctaagagctgttcaagattcaccctactaatgaaatatatttatatagaatcaacgagcttctga |
9578733 |
T |
|
| Q |
305 |
aaacgccattactccggttaaggttaaacgctactgccacactttcatcttcttatactcttcatct |
371 |
Q |
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| T |
9578734 |
aaacgccattaccccggttaaggttaaacgctactgccacactttcatcttcttatactcttcatct |
9578800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 361
Target Start/End: Original strand, 9573885 - 9574222
Alignment:
| Q |
29 |
cattgaaatggtgaatattttcttccactttcataagcttcgaatcagcttatattccatatctcaaagcaagaagataaacgttttagacattgctaag |
128 |
Q |
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| T |
9573885 |
cattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaagatacacgttttagacattgctaat |
9573984 |
T |
|
| Q |
129 |
tgttacttccaagttcctatttt------acatcacattaaatttggtcttccttctcatgtttgcaaaatgaagcctccgtcttccttataccatgata |
222 |
Q |
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|||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
9573985 |
cgttacttccaagttgctatgtttatgttacatcacattaaatttggtcttccttctcatgtttgcaaactgaagcctccctcttccttataccatgata |
9574084 |
T |
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| Q |
223 |
tgcttctataattttatctaagagctgttcaagattcaccctactaatgaaatatatttatatagaatcaacgagcttctgaaaacgccattactccggt |
322 |
Q |
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| ||||||||||||||||||||| | |||||||| ||| |||||||| |||||||||| |||||||||||| || |||| |||||||||||| || |
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| T |
9574085 |
tacttctataattttatctaagaaatattcaagatacacactactaatcaaatatatttttatagaatcaacaagattctaaaaacgccatta-tctaac |
9574183 |
T |
|
| Q |
323 |
taaggttaaacgctactgccacactttcatcttcttata |
361 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
9574184 |
cccggttaaaccctactgccacactttcatcttcttata |
9574222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 9582936 - 9583142
Alignment:
| Q |
5 |
caaacattttcatccaactcacttcattgaaatggtgaatattttcttccactttcataagcttcgaatcagcttatattccatatctcaaagcaagaag |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9582936 |
caaacattttcatccaactcacttcattgaaatgctgaatattttcttccactttcataagcttcgaatcagcttatattccatatctcaaagcaagaag |
9583035 |
T |
|
| Q |
105 |
ataaacgttttagacattgctaagtgttacttccaagttcctattttacatcacattaaatttggtcttccttctcatgtttgcaaaatgaagcctccgt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | |
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| T |
9583036 |
ataaacgttttagacattgctaagtgttacttccaagttcctattttacatcacattaaatttggtcttccttctcatgtttgtaaaatgaagccttcct |
9583135 |
T |
|
| Q |
205 |
cttcctt |
211 |
Q |
| |
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||||||| |
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|
| T |
9583136 |
cttcctt |
9583142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 48878071 - 48878256
Alignment:
| Q |
29 |
cattgaaatggtgaatattttcttccactttcataagcttcgaatcagcttatattccatatctcaaagcaagaagataaac--gttttagacattgcta |
126 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | || | | ||| |||||| |
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| T |
48878071 |
cattgagatgctgaatattttcttccactttcataagctttgaatcagcttatattcaatatctcaaagcaagaagaaacacaagcataagaaattgctt |
48878170 |
T |
|
| Q |
127 |
agtgttacttccaagttcctattttacatcacattaaatttggtcttccttctcatgtttgcaaaatgaagcctccgtcttcctta |
212 |
Q |
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| | ||||||| ||||| |||||||||||| |||||| ||||||||| |||||||||||||| ||||||||||| ||||||||| |
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| T |
48878171 |
attagtacttcctagttcttattttacatcatattaaaattggtcttctttctcatgtttgcaggatgaagcctccctcttcctta |
48878256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 48921620 - 48921568
Alignment:
| Q |
177 |
tctcatgtttgcaaaatgaagcctccgtcttccttataccatgatatgcttct |
229 |
Q |
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|||||||||||||||||||||| ||| ||||||||||| |||||||| ||||| |
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| T |
48921620 |
tctcatgtttgcaaaatgaagcttccctcttccttatagcatgatatacttct |
48921568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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