View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_33 (Length: 374)
Name: NF11655_low_33
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 928106 - 928465
Alignment:
| Q |
1 |
aacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928106 |
aacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaa |
928205 |
T |
|
| Q |
101 |
cattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatcccttt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928206 |
cattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatcccttt |
928305 |
T |
|
| Q |
201 |
acaccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtgtgaacaaaagaacacagccaatagcacgatca |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928306 |
accccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtgtgaacaaaagaacacagccaatagcacgatca |
928405 |
T |
|
| Q |
301 |
ttaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatg |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
928406 |
ttaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatg |
928465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 4 - 360
Target Start/End: Original strand, 923748 - 924110
Alignment:
| Q |
4 |
atgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaacat |
103 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
923748 |
atgatcatatctctactttttcctttcatgaccaaatatttcctaagaactccctctttttggaaaccagctttctccaaaactctttgagacccagcat |
923847 |
T |
|
| Q |
104 |
tttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatccctttaca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || || ||| |||||||| |||||| | |||||||||| |||| ||| ||| |||||||| |
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| T |
923848 |
tttccacatcaacaagagcttcaagcctttccaagtaagacaactcacagaatgcaaccttaaccacttgtttcacaacacaagtggcaacccctttacc |
923947 |
T |
|
| Q |
204 |
ccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggt------gtgaacaaaagaacacagccaatagcacga |
297 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||| ||| |||||| |||||| ||||| | | | | | |||||| ||||| |||||| |
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| T |
923948 |
ccaatatttagagcctagaacatagccaagttctgcacatttgttcctggatttatcaccaggtgaactcgaggatagagaaacacacccaattgcacga |
924047 |
T |
|
| Q |
298 |
tcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatg |
360 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||| | | ||| |||| |||||||||||| |
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|
| T |
924048 |
tcattgatgcatattgctttgcaccatagaaacttggtagcaatattttcaatgaagttgatg |
924110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 360
Target Start/End: Original strand, 939031 - 939390
Alignment:
| Q |
7 |
atcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaacatttt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
939031 |
atcatatctctgctttttcctttcatgaccaaatacttcccaagagttccctccttttggaaaccagctttctccaaaaccctttgagatccaacatttt |
939130 |
T |
|
| Q |
107 |
ccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatccctttacacca |
206 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| || || ||| |||||||| |||||| | |||||||||| || | ||| | || ||||||| ||| |
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| T |
939131 |
ccacatcaacaaaagcttcaactctttccaagtgtgacaactcactgaatgcaaccttaactacttgtttcacaacatacgtggctattcctttacccca |
939230 |
T |
|
| Q |
207 |
atatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtg----tga--acaaaagaacacagccaatagcacgatca |
300 |
Q |
| |
|
||||||||| |||| |||| |||||||||||| || |||||||||||||| | ||||| ||| || | ||||| |||||||||||||| |
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|
| T |
939231 |
gtatttagaggctagaacataggcaagttctgcagttttgttcctgcttttatcatgaggtgatcttgatttcagagaaacacggccaatagcacgattg |
939330 |
T |
|
| Q |
301 |
ttaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatg |
360 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||| || |||| |||| |||||| ||||| |
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|
| T |
939331 |
ttaaggcatattgctttgcaccatagaaacttgtttggtatattttcaatgaagctgatg |
939390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 935236 - 935451
Alignment:
| Q |
1 |
aacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | || | ||||||||||||| ||||| ||||| |||||| ||||||| | || |||| ||||||| |
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|
| T |
935236 |
aacatgatcatatctctgctttttcctttaaagaatacatacttcctaagaagcccctctttttgaaaaccaactttctcaagtactttttgcgacccaa |
935335 |
T |
|
| Q |
101 |
cattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatcccttt |
200 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||||||| | ||||||| |||||||| |||||| ||||||||||||||||||||| |||||||||| |
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| T |
935336 |
cattatccatatcaacaagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatcccttt |
935435 |
T |
|
| Q |
201 |
acaccaatatttagag |
216 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
935436 |
accccaatatttagag |
935451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 925774 - 925995
Alignment:
| Q |
1 |
aacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | || | |||||| |||||| |||||| ||||| |||||| |||| || | || ||||| ||||||| |
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|
| T |
925774 |
aacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctctttttgaaaaccaactttttcaagtactctttgtgacccaa |
925873 |
T |
|
| Q |
101 |
cattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgc------aatcttaacaatttgtttcacagcacatgtgacaat |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||||||||| |||||| || | |||| ||||||||||||||||| ||| |||| |
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|
| T |
925874 |
cattatccacatcaacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacacgtggcaat |
925973 |
T |
|
| Q |
195 |
ccctttacaccaatatttagag |
216 |
Q |
| |
|
|||||||| ||| ||||||||| |
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|
| T |
925974 |
ccctttaccccagtatttagag |
925995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 940075 - 940404
Alignment:
| Q |
17 |
tgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaacattttccacatcaac |
116 |
Q |
| |
|
||||||| ||||||||| || |||||| || || ||| ||||||||||||||||||||||||| || || |||||||||| ||||||||||| | |
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|
| T |
940075 |
tgcttttccctttcatgttcagatactttctgagtactccttccttttggaaaccagctttctccagcactctcagagacccaacgttttccacatctaa |
940174 |
T |
|
| Q |
117 |
aagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatccctttaca-ccaatatttaga |
215 |
Q |
| |
|
||| |||||||||||||| || | ||| ||| |||||||| |||||| | ||||||||||||||||||| |||||||||||| |||||||||| | |
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|
| T |
940175 |
taga--ttcaagcctttccatgtgtggaaactcactgaatgcaaccttaactacttgtttcacagcacatgtggaaatccctttacacccaatatttata |
940272 |
T |
|
| Q |
216 |
gcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggt------gtgaacaaaagaacacagccaatagcacgatcattaatgcat |
309 |
Q |
| |
|
|| |||| ||||||||||||| || ||| ||||||| || ||| | |||| | ||||||| ||| || || |||| ||||||||| | |||| |
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|
| T |
940273 |
gcctagaacatagccaagttctacacatttgttcctgcattcatcgt-aggtaatctcgaaaacaaaataactcacccgatagtacgatcattgaggcat |
940371 |
T |
|
| Q |
310 |
attgctttgcaacaaagaaacttgctttctata |
342 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||| |
|
|
| T |
940372 |
attgttttgcaacatagatacttgctttctata |
940404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 253
Target Start/End: Original strand, 46648079 - 46648277
Alignment:
| Q |
55 |
ccctccttttggaaaccagctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcga |
154 |
Q |
| |
|
|||||| |||| |||||||| |||||||| || || ||||| | | ||||||||||||||| |||||||||||||||||||||| | ||| || | | |
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|
| T |
46648079 |
ccctccctttgaaaaccagccttctccaatactctctgagaagccatattttccacatcaacttgagcttcaagcctttccaagtatggaaactccttaa |
46648178 |
T |
|
| Q |
155 |
atgcaatcttaacaatttgtttcacagcacatgtgacaatccctttacaccaatatttagagcttagattatagccaagttctgcagattgtttcctgc |
253 |
Q |
| |
|
||||| | ||| | |||||| ||| || |||| |||||||||| | |||||| || ||||| | | |||||||||||| ||||||| ||||||| |
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|
| T |
46648179 |
atgcagcttcaaccacttgtttgacaacaagtgtggcaatccctttgccccaatacttggagctcatagcatagccaagttcagcagatttgttcctgc |
46648277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 46656419 - 46656492
Alignment:
| Q |
67 |
aaaccagctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagta |
140 |
Q |
| |
|
|||||||| |||||||| ||||||||||| | ||||||||||||||||| |||| |||||||| |||||||| |
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|
| T |
46656419 |
aaaccagccttctccaacaccctttgagaagccacattttccacatcaactcgagcctcaagcctctccaagta |
46656492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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