View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11655_low_35 (Length: 368)
Name: NF11655_low_35
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 131 - 360
Target Start/End: Original strand, 46292642 - 46292871
Alignment:
| Q |
131 |
tattttagcctttatttattgacgtagaaatgatgtatgggataaagaatcattcaggacatttaaatattgattcttttcctttttggtaagtatatta |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46292642 |
tattttagcctttatttattgacgtagaaatgatgtatgggataaagaatcattcaggacatttaaatattgattcttttcctttttggtaagtatatta |
46292741 |
T |
|
| Q |
231 |
ttactattcttattcaacatcagacatatttttcatttctttgttgaatatatgaccttcttttcagcccnnnnnnncctgattttatatatacaggagc |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46292742 |
ttactattcttattcaacatcagacatatttttcatttctttgttgaatatttgaccttcttttcagccctttttttcctgattttatatatacaggagc |
46292841 |
T |
|
| Q |
331 |
ttatagaaaatctagaatttgacctttgct |
360 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
46292842 |
ttatagaaaatgtagaatttgacctttgct |
46292871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 46292272 - 46292389
Alignment:
| Q |
18 |
gctacaactgtcttacattatagttgtagtttgctttatggtccagctctggaatctgtgatattgttcccagccccttttacatctgttcagattttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
46292272 |
gctacaactgtcttacattatagttgtaatttgctttatggtccagctctggaatctgtgatattgttcccagcccctttttcgtctgttcagattttgt |
46292371 |
T |
|
| Q |
118 |
aatcaatggcttttattt |
135 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
46292372 |
aatcaatggcttttattt |
46292389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 168 - 281
Target Start/End: Original strand, 46293005 - 46293115
Alignment:
| Q |
168 |
tgggataaagaatcattcaggacatttaaatattgattcttttcctttttggtaagtatattattactattcttattcaacatcagacatatttttcatt |
267 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| |||||||| || |||||| | | |||||||||||||| | |
|
|
| T |
46293005 |
tgggataaagaatcattcaagacatttgaatattgattcttttcctttttgggaagtttattatta---ttgttattccatttaagacatatttttcact |
46293101 |
T |
|
| Q |
268 |
tctttgttgaatat |
281 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
46293102 |
tctttgttgaatat |
46293115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University